Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g019090 Solanum pennellii HOM05D003582 ORTHO05D004789 8.5e-268 926.4 459 100.0
Nitab4.5_0000154g0240 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.3e-162 577.0 556 59.7
Nitab4.5_0001434g0060 Nicotiana tabacum HOM05D003582 ORTHO05D004789 7.0e-161 571.2 540 59.6
Peaxi162Scf01619g00009 Petunia axillaris HOM05D003582 ORTHO05D004789 1.3e-159 567.0 540 59.6
Solyc03g070400.3 Solanum lycopersicum HOM05D003582 ORTHO05D004789 3.0e-156 555.8 304 89.1
CAN.G497.77 Capsicum annuum HOM05D003582 ORTHO05D004789 1.8e-140 503.4 556 54.5
Nitab4.5_0005120g0010 Nicotiana tabacum HOM05D003582 ORTHO05D004789 9.8e-139 497.7 557 53.7
Nitab4.5_0006516g0040 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.3e-138 497.3 541 54.3
PGSC0003DMG400001466 Solanum tuberosum HOM05D003582 ORTHO05D004789 4.9e-138 495.4 556 53.8
Solyc02g089175.2 Solanum lycopersicum HOM05D003582 ORTHO05D004789 3.2e-137 492.7 556 53.2
Rhsim08G0076400 Rhododendron simsii HOM05D003582 ORTHO05D004789 5.4e-137 491.9 554 52.3
Sopen02g033970 Solanum pennellii HOM05D003582 ORTHO05D004789 2.0e-136 490.0 556 52.9
Duzib133G0617 Durio zibethinus HOM05D003582 ORTHO05D004789 2.7e-136 489.6 556 51.4
Duzib138G0134 Durio zibethinus HOM05D003582 ORTHO05D004789 2.7e-136 489.6 556 51.4
Hma1.2p1_0069F.1_g037480 Hydrangea macrophylla HOM05D003582 ORTHO05D004789 5.9e-136 488.4 557 52.1
Migut.H00593 Erythranthe guttata HOM05D003582 ORTHO05D004789 1.0e-135 487.6 554 52.3
CSS0004005 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 1.3e-135 487.3 554 51.4
CSS0033422 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 1.3e-135 487.3 554 51.4
GSVIVG01036556001 Vitis vinifera HOM05D003582 ORTHO05D004789 1.3e-135 487.3 557 51.3
vmacro18132 Vaccinium macrocarpon HOM05D003582 ORTHO05D004789 8.6e-135 484.6 554 51.3
Cc00_g14200 Coffea canephora HOM05D003582 ORTHO05D004789 1.5e-134 483.8 554 51.8
MD09G1073500 Malus domestica HOM05D003582 ORTHO05D004789 1.2e-133 480.7 557 50.4
Thecc.04G104800 Theobroma cacao HOM05D003582 ORTHO05D004789 2.1e-133 479.9 556 51.3
Oeu021205.1 Olea europaea HOM05D003582 ORTHO05D004789 2.8e-133 479.6 554 51.1
RcHm_v2.0_Chr2g0165001 Rosa chinensis HOM05D003582 ORTHO05D004789 3.6e-133 479.2 556 50.4
Gorai.001G207700 Gossypium raimondii HOM05D003582 ORTHO05D004789 6.2e-133 478.4 556 50.7
Glyma.19G033700 Glycine max HOM05D003582 ORTHO05D004789 8.0e-133 478.0 572 49.7
Prupe.3G249800 Prunus persica HOM05D003582 ORTHO05D004789 2.3e-132 476.5 557 50.4
VMungo0464G0741 Vigna mungo HOM05D003582 ORTHO05D004789 2.3e-132 476.5 573 49.9
MD17G1065000 Malus domestica HOM05D003582 ORTHO05D004789 3.1e-132 476.1 557 49.9
Cfa007687 Carpinus fangiana HOM05D003582 ORTHO05D004789 4.0e-132 475.7 557 50.8
Ca_20768_v3 Cicer arietinum L. HOM05D003582 ORTHO05D004789 6.8e-132 474.9 570 50.0
Cpa.g.sc14.212 Carica papaya HOM05D003582 ORTHO05D004789 8.9e-132 474.6 560 50.9
ECA238G0900 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.2e-131 474.2 555 51.0
CiPaw.03G083900 Carya illinoinensis HOM05D003582 ORTHO05D004789 1.5e-131 473.8 558 50.7
Lj4A122T65 Lonicera japonica HOM05D003582 ORTHO05D004789 2.0e-131 473.4 555 49.5
CANSAT64G2522 Cannabis sativa HOM05D003582 ORTHO05D004789 3.4e-131 472.6 560 50.0
Eucgr.J01408 Eucalyptus grandis HOM05D003582 ORTHO05D004789 3.4e-131 472.6 560 50.2
Phvul.004G041500 Phaseolus vulgaris HOM05D003582 ORTHO05D004789 1.3e-130 470.7 572 48.8
Potri.004G117900 Populus trichocarpa HOM05D003582 ORTHO05D004789 1.7e-130 470.3 557 49.9
Sc10g0000640 Simmondsia chinensis HOM05D003582 ORTHO05D004789 3.7e-130 469.2 561 48.5
Lalb_Chr02g0158711 Lupinus albus HOM05D003582 ORTHO05D004789 6.4e-130 468.4 573 49.9
TAR371G0699 Trochodendron aralioides HOM05D003582 ORTHO05D004789 8.3e-130 468.0 556 50.5
Actinidia17602 Actinidia chinensis HOM05D003582 ORTHO05D004789 1.1e-129 467.6 557 50.3
Actinidia26267 Actinidia chinensis HOM05D003582 ORTHO05D004789 1.1e-129 467.6 533 52.2
PGR042G1977 Punica granatum HOM05D003582 ORTHO05D004789 1.4e-129 467.2 562 49.1
ECA232G0785 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.9e-129 466.8 556 49.6
Gohir.A07G180200 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.9e-129 466.8 553 49.9
Glyma.13G053100 Glycine max HOM05D003582 ORTHO05D004789 2.4e-129 466.5 572 48.8
arahy.Tifrunner.gnm1.ann1.90NIGC Arachis hypogaea HOM05D003582 ORTHO05D004789 3.2e-129 466.1 570 49.1
Potri.017G099200 Populus trichocarpa HOM05D003582 ORTHO05D004789 3.2e-129 466.1 557 49.7
SGA_v2.0_scaffold52G19103 Striga asiatica HOM05D003582 ORTHO05D004789 3.2e-129 466.1 561 49.2
Ciclev10011357m.g Citrus clementina HOM05D003582 ORTHO05D004789 9.2e-129 464.5 557 50.6
ClCG11G004930 Citrullus lanatus HOM05D003582 ORTHO05D004789 1.2e-128 464.2 560 48.8
QL02p066091 Quercus lobata HOM05D003582 ORTHO05D004789 1.2e-128 464.2 556 50.5
Migut.O00385 Erythranthe guttata HOM05D003582 ORTHO05D004789 1.6e-128 463.8 556 49.3
TWI60G0725 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 3.5e-128 462.6 559 49.6
Sabra17G0085700 Salix brachista HOM05D003582 ORTHO05D004789 4.6e-128 462.2 557 49.4
SalBow1G0251 Salvia bowleyana HOM05D003582 ORTHO05D004789 6.0e-128 461.8 558 49.8
Nn3g17508 Nelumbo nucifera HOM05D003582 ORTHO05D004789 7.8e-128 461.5 557 49.0
arahy.Tifrunner.gnm1.ann1.YPLH9H Arachis hypogaea HOM05D003582 ORTHO05D004789 1.3e-127 460.7 570 48.8
Gohir.D11G165800 Gossypium hirsutum HOM05D003582 ORTHO05D004789 2.3e-127 459.9 553 49.7
Gorai.007G176800 Gossypium raimondii HOM05D003582 ORTHO05D004789 2.3e-127 459.9 553 49.9
TWI32G0037 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 2.3e-127 459.9 559 49.2
Manes.01G103000 Manihot esculenta HOM05D003582 ORTHO05D004789 5.0e-127 458.8 583 48.2
HanXRQChr14g0452431 Helianthus annuus HOM05D003582 ORTHO05D004789 8.6e-127 458.0 553 49.2
Gohir.A11G159700 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.1e-126 457.6 553 49.7
Manes.02G058750 Manihot esculenta HOM05D003582 ORTHO05D004789 1.9e-126 456.8 588 47.4
PSO017G5930 Papaver somniferum HOM05D003582 ORTHO05D004789 2.5e-126 456.4 555 48.8
PSO478G3099 Papaver somniferum HOM05D003582 ORTHO05D004789 2.5e-126 456.4 555 49.0
arahy.Tifrunner.gnm1.ann1.936LCP Arachis hypogaea HOM05D003582 ORTHO05D004789 5.6e-126 455.3 572 49.0
MELO3C022046.2 Cucumis melo HOM05D003582 ORTHO05D004789 7.3e-126 454.9 560 48.4
DCAR_025450 Daucus carota HOM05D003582 ORTHO05D004789 7.3e-126 454.9 562 48.2
Sed0004528 Sechium edule HOM05D003582 ORTHO05D004789 1.6e-125 453.8 558 48.4
Aqoxy3G01120 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 3.6e-125 452.6 562 48.6
Sed0002547 Sechium edule HOM05D003582 ORTHO05D004789 3.6e-125 452.6 564 47.7
FAN14G2787 Fragaria x ananassa HOM05D003582 ORTHO05D004789 8.1e-125 451.4 588 46.6
FAN02G0181 Fragaria x ananassa HOM05D003582 ORTHO05D004789 2.3e-124 449.9 588 46.3
HanXRQChr09g0264801 Helianthus annuus HOM05D003582 ORTHO05D004789 5.2e-124 448.7 553 49.0
BcaB08g36862 Brassica carinata HOM05D003582 ORTHO05D004789 6.8e-124 448.4 556 48.0
FAN05G2033 Fragaria x ananassa HOM05D003582 ORTHO05D004789 8.9e-124 448.0 588 46.4
Lsat_1_v5_gn_2_89661 Lactuca sativa HOM05D003582 ORTHO05D004789 8.9e-124 448.0 570 47.7
arahy.Tifrunner.gnm1.ann1.3TK0C1 Arachis hypogaea HOM05D003582 ORTHO05D004789 1.5e-123 447.2 597 46.6
Lj2g0024434 Lotus japonicus HOM05D003582 ORTHO05D004789 1.5e-123 447.2 570 47.9
CsaV3_5G038660 Cucumis sativus L. HOM05D003582 ORTHO05D004789 2.0e-123 446.8 570 47.0
Hund13680 Selenicereus undatus HOM05D003582 ORTHO05D004789 4.4e-123 445.7 561 47.1
HanXRQChr15g0489031 Helianthus annuus HOM05D003582 ORTHO05D004789 7.5e-123 444.9 557 48.5
Lj1g0000491 Lotus japonicus HOM05D003582 ORTHO05D004789 2.2e-122 443.4 569 48.5
A10p23210 Brassica napus HOM05D003582 ORTHO05D004789 4.9e-122 442.2 553 47.6
BraA10t44389Z Brassica rapa HOM05D003582 ORTHO05D004789 4.9e-122 442.2 553 47.6
Carub.0006s1397 Capsella rubella HOM05D003582 ORTHO05D004789 4.9e-122 442.2 553 47.7
CARHR197510 Cardamine hirsuta HOM05D003582 ORTHO05D004789 4.9e-122 442.2 556 47.7
AT5G15810 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 6.4e-122 441.8 553 47.4
THA.LOC104802987 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 6.4e-122 441.8 559 48.1
Aqoxy7G03254 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 1.4e-121 440.7 566 48.8
Aa31LG11G13760 Aethionema arabicum HOM05D003582 ORTHO05D004789 1.9e-121 440.3 553 47.7
AUR62009488 Chenopodium quinoa HOM05D003582 ORTHO05D004789 1.9e-121 440.3 560 45.5
AL6G26670 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 4.1e-121 439.1 553 47.0
AUR62023166 Chenopodium quinoa HOM05D003582 ORTHO05D004789 9.2e-121 438.0 560 45.4
Sabra04G0071000 Salix brachista HOM05D003582 ORTHO05D004789 9.2e-121 438.0 619 44.4
Haze_14390 Corylus avellana HOM05D003582 ORTHO05D004789 1.2e-120 437.6 652 43.7
Thhalv10013036m.g Eutrema salsugineum HOM05D003582 ORTHO05D004789 3.5e-120 436.0 553 47.0
Psat1g066040 Pisum sativum HOM05D003582 ORTHO05D004789 6.0e-120 435.3 570 47.5
Ah.10g038150 Amaranthus hybridus HOM05D003582 ORTHO05D004789 7.8e-120 434.9 565 46.7
Sp6g28300 Schrenkiella parvula HOM05D003582 ORTHO05D004789 7.8e-120 434.9 553 47.0
THA.LOC104827143 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.0e-119 434.5 556 47.3
Nn4g23497 Nelumbo nucifera HOM05D003582 ORTHO05D004789 3.0e-119 433.0 559 47.4
C09p61260 Brassica napus HOM05D003582 ORTHO05D004789 8.6e-119 431.4 553 46.8
MBI16_g37884_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D004789 8.6e-119 431.4 530 48.7
unitig_0.g556 Utricularia gibba HOM05D003582 ORTHO05D004789 1.1e-118 431.0 524 49.2
CDE07G0251 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 1.5e-118 430.6 556 45.5
Ah.16g101080 Amaranthus hybridus HOM05D003582 ORTHO05D004789 2.5e-118 429.9 563 45.5
BcaC04g18934 Brassica carinata HOM05D003582 ORTHO05D004789 3.3e-118 429.5 553 46.7
BolC9t58968H Brassica oleracea HOM05D003582 ORTHO05D004789 3.3e-118 429.5 553 46.7
Aa31LG5G12860 Aethionema arabicum HOM05D003582 ORTHO05D004789 4.3e-118 429.1 557 46.9
CDE04G3698 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 4.3e-118 429.1 553 45.8
Carub.0003s0143 Capsella rubella HOM05D003582 ORTHO05D004789 5.6e-118 428.7 554 46.8
CDE07G0024 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 1.2e-117 427.6 556 45.7
AT3G02320 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 1.6e-117 427.2 554 46.9
Medtr6g015885 Medicago truncatula HOM05D003582 ORTHO05D004789 2.1e-117 426.8 570 46.0
BcaC09g47691 Brassica carinata HOM05D003582 ORTHO05D004789 2.8e-117 426.4 553 46.5
FAN09G2080 Fragaria x ananassa HOM05D003582 ORTHO05D004789 4.7e-117 425.6 581 44.9
A03p07370 Brassica napus HOM05D003582 ORTHO05D004789 1.4e-116 424.1 553 46.3
AL3G11610 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 3.1e-116 422.9 554 46.9
Sp3g01380 Schrenkiella parvula HOM05D003582 ORTHO05D004789 3.1e-116 422.9 553 47.2
TPR.G15956 Trifolium pratense HOM05D003582 ORTHO05D004789 5.2e-116 422.2 573 45.7
THA.LOC104823883 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 8.9e-116 421.4 559 46.3
BcaB01g05025 Brassica carinata HOM05D003582 ORTHO05D004789 1.5e-115 420.6 553 45.8
CARHR076300 Cardamine hirsuta HOM05D003582 ORTHO05D004789 1.5e-115 420.6 553 46.7
Gohir.D07G187100 Gossypium hirsutum HOM05D003582 ORTHO05D004789 4.4e-115 419.1 469 52.0
BraA03t10061Z Brassica rapa HOM05D003582 ORTHO05D004789 7.6e-115 418.3 560 45.2
HPP92_012207 Vanilla planifolia HOM05D003582 ORTHO05D004789 9.9e-115 417.9 565 43.7
BolC1t05913H Brassica oleracea HOM05D003582 ORTHO05D004789 8.4e-114 414.8 563 45.5
BcaC09g47692 Brassica carinata HOM05D003582 ORTHO05D004789 1.9e-113 413.7 556 45.9
EL10Ac2g04447 Beta vulgaris HOM05D003582 ORTHO05D004789 1.2e-112 411.0 566 45.2
SGA_v2.0_scaffold4G02360 Striga asiatica HOM05D003582 ORTHO05D004789 4.6e-112 409.1 466 50.6
Dinv34912 Davidia involucrata HOM05D003582 ORTHO05D004789 1.7e-111 407.1 441 53.1
BraSC141t45620Z Brassica rapa HOM05D003582 ORTHO05D004789 2.3e-111 406.8 558 45.2
C03p08560 Brassica napus HOM05D003582 ORTHO05D004789 5.1e-111 405.6 583 43.4
BolC3t13361H Brassica oleracea HOM05D003582 ORTHO05D004789 5.1e-111 405.6 583 43.4
SEGI_16900 Sequoiadendron giganteum HOM05D003582 ORTHO05D004789 6.9e-108 395.2 580 42.4
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 9.0e-108 394.8 557 45.8
FvH4_6g46450 Fragaria vesca HOM05D003582 ORTHO05D004789 7.6e-107 391.7 502 46.8
BNapus_Darmor_BZH_scaffold_208p00140 Brassica napus HOM05D003582 ORTHO05D004789 1.3e-106 391.0 499 48.1
Oeu004424.1 Olea europaea HOM05D003582 ORTHO05D004789 2.9e-106 389.8 522 47.1
ATR0827G075 Amborella trichopoda HOM05D003582 ORTHO05D004789 3.8e-106 389.4 558 42.7
Zm00001eb061890 Zea mays HOM05D003582 ORTHO05D004789 2.7e-104 383.3 562 41.5
Atru.chr8.571 Acer truncatum HOM05D003582 ORTHO05D004789 1.3e-103 380.9 449 51.9
Os03g0786700 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 1.7e-103 380.6 555 43.1
Peaxi162Scf00166g00210 Petunia axillaris HOM05D003582 ORTHO05D004789 2.3e-103 380.2 306 65.0
HPP92_012242 Vanilla planifolia HOM05D003582 ORTHO05D004789 3.9e-103 379.4 646 38.1
DCAR_011024 Daucus carota HOM05D003582 ORTHO05D004789 1.1e-97 361.3 479 45.7
SMO203G0237 Selaginella moellendorffii HOM05D003582 ORTHO05D004789 3.2e-97 359.8 554 41.0
Mapoly0103s0023 Marchantia polymorpha HOM05D003582 ORTHO05D004789 1.6e-93 347.4 559 39.2
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 9.9e-91 338.2 569 38.7
CBR_g3723 Chara braunii HOM05D003582 ORTHO05D004789 4.8e-85 319.3 526 37.1
Zm00001eb012220 Zea mays HOM05D003582 ORTHO05D004789 5.8e-83 312.4 302 51.7
Os10g0357800 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 1.5e-78 297.7 545 36.1
Zm00001eb230770 Zea mays HOM05D003582 ORTHO05D004789 6.9e-76 288.9 457 38.3
PGSC0003DMG402007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 6.5e-74 282.3 269 58.4
MCO10G029 Micromonas commoda HOM05D003582 ORTHO05D004789 6.3e-69 265.8 556 33.8
Eucgr.J01405 Eucalyptus grandis HOM05D003582 ORTHO05D004789 4.2e-65 253.1 202 64.4
Hma1.2p1_1502F.1_g287410 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 5.5e-65 252.7 487 38.8
Hma1.2p1_2026F.1_g311626 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 5.5e-65 252.7 487 38.8
PGSC0003DMG401007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 9.7e-62 241.9 264 57.6
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 5.0e-58 229.6 460 33.7
COL.COLO4_08945 Corchorus olitorius HOM05D003582 ORTHO05D004789 3.6e-56 223.4 409 37.2
Dinv33857 Davidia involucrata HOM05D003582 ORTHO05D004789 4.8e-53 213.0 301 46.2
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 3.7e-45 186.8 366 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1885 Anthoceros agrestis HOM05D003582 ORTHO05D004789 2.0e-38 164.5 416 31.5
MBI16_g47662_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D022453 6.1e-32 142.9 213 42.3
CDE01G0712 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 8.0e-32 142.5 189 44.4
Nn3g17509 Nelumbo nucifera HOM05D003582 ORTHO05D004789 3.0e-23 114.0 208 38.5
Solyc03g070410.3 Solanum lycopersicum HOM05D003582 ORTHO05D390892 6.8e-23 112.8 144 52.1
arahy.Tifrunner.gnm1.ann1.DBFW6U Arachis hypogaea HOM05D001801 ORTHO05D001739 3.2e-20 104.0 220 37.3
CDE04G0570 Ceratophyllum demersum HOM05D003582 ORTHO05D130660 2.3e-18 97.8 174 36.2
Oeu021203.1 Olea europaea HOM05D000526 ORTHO05D000956 2.3e-18 97.8 86 58.1
COL.COLO4_00020 Corchorus olitorius HOM05D003582 ORTHO05D022453 8.9e-15 85.9 48 83.3
Hma1.2p1_1502F.1_g287400 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.7e-10 71.6 103 43.7
Hma1.2p1_2026F.1_g311623 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 1.7e-10 71.6 103 43.7


User provided reference genes

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