Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g005640 Solanum pennellii HOM05D029188 ORTHO05D020309 2.2e-217 758.8 433 100.0
Solyc03g031780.4 Solanum lycopersicum HOM05D029188 ORTHO05D020309 7.4e-197 690.6 433 88.5
PGSC0003DMG400024070 Solanum tuberosum HOM05D029188 ORTHO05D020309 2.0e-186 656.0 444 79.7
CAN.G404.11 Capsicum annuum HOM05D029188 ORTHO05D020309 8.0e-66 255.4 433 46.9
Nitab4.5_0010745g0010 Nicotiana tabacum HOM05D001861 ORTHO05D020309 4.7e-42 176.4 482 37.8
Peaxi162Scf00155g00022 Petunia axillaris HOM05D001861 ORTHO05D020309 1.2e-40 171.8 458 37.1
Nitab4.5_0000091g0480 Nicotiana tabacum HOM05D001861 ORTHO05D020309 2.9e-39 167.2 475 36.4
GSVIVG01023442001 Vitis vinifera HOM05D001861 ORTHO05D001868 3.9e-20 103.6 283 35.0
Thecc.05G270000 Theobroma cacao HOM05D001861 ORTHO05D001868 1.3e-18 98.6 279 36.6
Duzib177G0739 Durio zibethinus HOM05D001861 ORTHO05D001868 1.6e-18 98.2 280 36.8
Gorai.007G274900 Gossypium raimondii HOM05D001861 ORTHO05D001868 3.6e-18 97.1 273 35.5
Gohir.D11G256600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 1.4e-17 95.1 273 35.2
Gohir.A11G246400 Gossypium hirsutum HOM05D001861 ORTHO05D001868 2.0e-16 91.3 276 35.1
COL.COLO4_15500 Corchorus olitorius HOM05D001861 ORTHO05D001868 4.4e-16 90.1 247 37.2
FAN05G5582 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.3e-15 88.6 283 35.0
Manes.08G140100 Manihot esculenta HOM05D001861 ORTHO05D001868 1.3e-15 88.6 329 31.9
Sed0009743 Sechium edule HOM05D001861 ORTHO05D001868 4.9e-15 86.7 283 33.9
Cc02_g08730 Coffea canephora HOM05D001861 ORTHO05D001868 8.4e-15 85.9 487 26.9
FAN09G3342 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.4e-14 85.1 471 29.5
FAN05G0278 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.9e-14 84.7 287 34.5
FAN14G5619 Fragaria x ananassa HOM05D001861 ORTHO05D001868 3.2e-14 84.0 286 35.3
Lj2A44T76 Lonicera japonica HOM05D001861 ORTHO05D001868 4.2e-14 83.6 262 35.5
CsaV3_2G009870 Cucumis sativus L. HOM05D001861 ORTHO05D001868 7.1e-14 82.8 281 32.0
Atru.chr2.1000 Acer truncatum HOM05D001861 ORTHO05D001868 9.3e-14 82.4 284 33.5
AUR62040915 Chenopodium quinoa HOM05D001861 ORTHO05D001868 9.3e-14 82.4 262 34.4
Prupe.6G350800 Prunus persica HOM05D001861 ORTHO05D001868 9.3e-14 82.4 279 34.1
HanXRQChr14g0454241 Helianthus annuus HOM05D001861 ORTHO05D001868 1.2e-13 82.0 256 32.8
HanXRQChr14g0455311 Helianthus annuus HOM05D001861 ORTHO05D001868 1.2e-13 82.0 256 32.8
QL03p029819 Quercus lobata HOM05D001861 ORTHO05D001868 4.6e-13 80.1 415 27.5
ECA238G0949 Erigeron canadensis HOM05D001861 ORTHO05D001868 6.0e-13 79.7 259 34.4
MD12G1249400 Malus domestica HOM05D001861 ORTHO05D001868 6.0e-13 79.7 270 34.4
Sabra13G0043700 Salix brachista HOM05D001861 ORTHO05D001868 1.0e-12 79.0 267 34.5
Hund06903 Selenicereus undatus HOM05D001861 ORTHO05D001868 1.0e-12 79.0 282 30.5
CSS0044247 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 1.3e-12 78.6 287 32.4
MELO3C008695.2 Cucumis melo HOM05D001861 ORTHO05D001868 2.3e-12 77.8 277 32.1
Potri.013G047700 Populus trichocarpa HOM05D001861 ORTHO05D001868 2.3e-12 77.8 269 36.1
Lj1g0025782 Lotus japonicus HOM05D001861 ORTHO05D001868 3.9e-12 77.0 274 29.9
FvH4_6g01750 Fragaria vesca HOM05D001861 ORTHO05D001868 8.7e-12 75.9 472 29.2
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.5e-11 75.1 287 31.4
Cfa006362 Carpinus fangiana HOM05D001861 ORTHO05D001868 1.9e-11 74.7 261 34.9
FAN14G2355 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.9e-11 74.7 472 28.8
PGR004G2436 Punica granatum HOM05D001861 ORTHO05D001868 1.9e-11 74.7 285 31.9
AUR62004829 Chenopodium quinoa HOM05D001861 ORTHO05D001868 3.3e-11 73.9 190 34.7
CiPaw.07G073500 Carya illinoinensis HOM05D001861 ORTHO05D001868 5.6e-11 73.2 151 37.1
Ciclev10021910m.g Citrus clementina HOM05D001861 ORTHO05D001868 5.6e-11 73.2 242 33.5
Eucgr.H04224 Eucalyptus grandis HOM05D001861 ORTHO05D001868 5.6e-11 73.2 277 33.6
Cpa.g.sc306.5 Carica papaya HOM05D001861 ORTHO05D001868 7.3e-11 72.8 323 30.0
Haze_04414 Corylus avellana HOM05D001861 ORTHO05D001868 1.3e-10 72.0 314 31.8
CANSAT54G0422 Cannabis sativa HOM05D001861 ORTHO05D001868 2.8e-10 70.9 275 30.9
Actinidia09524 Actinidia chinensis HOM05D001861 ORTHO05D001868 4.8e-10 70.1 168 35.7
ClCG11G010520 Citrullus lanatus HOM05D001861 ORTHO05D001868 4.8e-10 70.1 387 25.6
Oeu035746.1 Olea europaea HOM05D001861 ORTHO05D001868 6.2e-10 69.7 279 31.2
Oeu014533.1 Olea europaea HOM05D001861 ORTHO05D001868 8.1e-10 69.3 257 32.3
PSO832G1062 Papaver somniferum HOM05D001861 ORTHO05D001868 1.4e-09 68.6 303 30.4
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 2.4e-09 67.8 289 30.4
PSO674G0045 Papaver somniferum HOM05D001861 ORTHO05D001868 2.4e-09 67.8 303 30.4
Sc20g0000700 Simmondsia chinensis HOM05D001861 ORTHO05D001868 2.4e-09 67.8 278 29.5
Rhsim13G0039200 Rhododendron simsii HOM05D001861 ORTHO05D001868 5.3e-09 66.6 164 32.3
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 6.9e-09 66.2 279 29.7
Lalb_Chr04g0262111 Lupinus albus HOM05D001861 ORTHO05D001868 6.9e-09 66.2 272 27.9
arahy.Tifrunner.gnm1.ann1.1WV257 Arachis hypogaea HOM05D001861 ORTHO05D001868 9.0e-09 65.9 261 34.5
arahy.Tifrunner.gnm1.ann1.M57DEN Arachis hypogaea HOM05D001861 ORTHO05D001868 1.2e-08 65.5 276 34.8
EL10Ac4g08993 Beta vulgaris HOM05D001861 ORTHO05D001868 1.5e-08 65.1 277 28.9
HanXRQChr15g0467271 Helianthus annuus HOM05D001861 ORTHO05D001868 1.5e-08 65.1 183 32.2
Ah.15g092690 Amaranthus hybridus HOM05D001861 ORTHO05D001868 2.6e-08 64.3 147 34.7
Dinv34661 Davidia involucrata HOM05D001861 ORTHO05D001868 2.6e-08 64.3 161 34.2
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 2.6e-08 64.3 288 30.9
Rhsim09G0135500 Rhododendron simsii HOM05D001861 ORTHO05D001868 4.5e-08 63.5 245 32.2
vmacro02703 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 4.5e-08 63.5 288 27.4
Actinidia30135 Actinidia chinensis HOM05D001861 ORTHO05D001868 9.9e-08 62.4 155 36.8
VMungo0540G1565 Vigna mungo HOM05D001861 ORTHO05D001868 9.9e-08 62.4 283 32.5
ECA247G2121 Erigeron canadensis HOM05D001861 ORTHO05D001868 1.3e-07 62.0 271 29.9
Hma1.2p1_0273F.1_g109330 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 1.3e-07 62.0 176 31.8
RcHm_v2.0_Chr3g0449491 Rosa chinensis HOM05D001861 ORTHO05D001868 1.3e-07 62.0 474 27.8
Cpa.g.sc165.47 Carica papaya HOM05D001861 ORTHO05D001868 1.7e-07 61.6 163 37.4
arahy.Tifrunner.gnm1.ann1.MP36QT Arachis hypogaea HOM05D001861 ORTHO05D001868 2.2e-07 61.2 163 33.1
CANSAT01G1959 Cannabis sativa HOM05D001861 ORTHO05D001868 2.2e-07 61.2 163 33.7
Sed0015596 Sechium edule HOM05D001861 ORTHO05D001868 2.2e-07 61.2 314 27.1
Duzib138G0460 Durio zibethinus HOM05D001861 ORTHO05D001868 2.9e-07 60.8 163 34.4
MD04G1231100 Malus domestica HOM05D001861 ORTHO05D001868 3.8e-07 60.5 276 30.4
Oeu035752.3 Olea europaea HOM05D001861 ORTHO05D001868 3.8e-07 60.5 166 34.9
Phvul.006G104900 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 3.8e-07 60.5 285 31.2
Potri.002G258501 Populus trichocarpa HOM05D001861 ORTHO05D001868 3.8e-07 60.5 169 35.5
TWI75G1188 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 3.8e-07 60.5 172 32.6
Aqoxy5G00168 Aquilegia oxysepala HOM05D001861 ORTHO05D001868 4.9e-07 60.1 246 30.1
Glyma.19G167200 Glycine max HOM05D001861 ORTHO05D001868 4.9e-07 60.1 283 30.7
RcHm_v2.0_Chr6g0287181 Rosa chinensis HOM05D001861 ORTHO05D001868 4.9e-07 60.1 176 32.4
Actinidia37543 Actinidia chinensis HOM05D001861 ORTHO05D001868 6.4e-07 59.7 270 31.5
GSVIVG01028395001 Vitis vinifera HOM05D001861 ORTHO05D001868 6.4e-07 59.7 171 34.5
Haze_24681 Corylus avellana HOM05D001861 ORTHO05D001868 8.4e-07 59.3 174 33.3
TWI12G0903 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 8.4e-07 59.3 173 32.4
Ciclev10020148m.g Citrus clementina HOM05D001861 ORTHO05D001868 1.1e-06 58.9 175 32.6
Rhsim09G0134700 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.1e-06 58.9 203 33.5
Sabra02G0196600 Salix brachista HOM05D001861 ORTHO05D001868 1.4e-06 58.5 171 35.1
Glyma.10G039500 Glycine max HOM05D001861 ORTHO05D001868 1.9e-06 58.2 157 33.1
Psat6g061640 Pisum sativum HOM05D001861 ORTHO05D001868 1.9e-06 58.2 275 27.6
HPP92_022494 Vanilla planifolia HOM05D001861 ORTHO05D001868 2.4e-06 57.8 261 29.1
Ah.04g163160 Amaranthus hybridus HOM05D001861 ORTHO05D001868 3.2e-06 57.4 199 36.2
Lj5g0016435 Lotus japonicus HOM05D001861 ORTHO05D001868 3.2e-06 57.4 160 33.1
Glyma.03G166000 Glycine max HOM05D001861 ORTHO05D001868 4.2e-06 57.0 273 28.9
Glyma.03G250200 Glycine max HOM05D001861 ORTHO05D001868 4.2e-06 57.0 266 28.9
Phvul.001G163600 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 4.2e-06 57.0 146 37.0
Rhsim09G0135100 Rhododendron simsii HOM05D001861 ORTHO05D001868 4.2e-06 57.0 245 29.0
Manes.13G037900 Manihot esculenta HOM05D001861 ORTHO05D001868 5.5e-06 56.6 169 34.9
RhsimUnG0083600 Rhododendron simsii HOM05D001861 ORTHO05D001868 5.5e-06 56.6 245 31.4
CiPaw.03G268800 Carya illinoinensis HOM05D001861 ORTHO05D001868 7.1e-06 56.2 273 30.4
FAN15G3358 Fragaria x ananassa HOM05D001861 ORTHO05D001868 9.3e-06 55.8 177 31.1
Sc05g0003130 Simmondsia chinensis HOM05D001861 ORTHO05D001868 9.3e-06 55.8 147 34.7


User provided reference genes

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