Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 4.7e-58 227.6 115 100.0
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 2.2e-55 218.8 115 98.3
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 6.9e-25 117.5 61 96.7
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 9.0e-17 90.5 58 77.6
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.3e-15 86.7 43 95.3
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 6.1e-13 77.8 62 67.7
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 6.1e-13 77.8 62 67.7
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 1.0e-12 77.0 48 79.2
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 1.0e-12 77.0 60 66.7
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 3.9e-12 75.1 58 69.0
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 5.1e-12 74.7 58 65.5
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 8.8e-12 73.9 54 72.2
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.5e-11 73.2 58 65.5
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 2.0e-11 72.8 59 62.7
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.0e-11 72.8 60 60.0
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 4.3e-11 71.6 59 62.7
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 4.3e-11 71.6 52 69.2
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 5.7e-11 71.2 39 82.1
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 7.4e-11 70.9 53 69.8
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 7.4e-11 70.9 43 81.4
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 9.7e-11 70.5 47 70.2
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 9.7e-11 70.5 57 63.2
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 1.3e-10 70.1 58 60.3
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 1.3e-10 70.1 53 69.8
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 1.7e-10 69.7 64 60.9
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 2.2e-10 69.3 52 67.3
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 2.2e-10 69.3 64 59.4
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 3.7e-10 68.6 49 65.3
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 3.7e-10 68.6 59 59.3
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.7e-10 68.6 62 59.7
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 4.8e-10 68.2 57 59.6
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 4.8e-10 68.2 61 59.0
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 6.3e-10 67.8 51 68.6
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 6.3e-10 67.8 79 48.1
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 8.2e-10 67.4 55 65.5
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 8.2e-10 67.4 40 75.0
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 8.2e-10 67.4 55 60.0
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 8.2e-10 67.4 59 61.0
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 8.2e-10 67.4 67 52.2
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 8.2e-10 67.4 51 66.7
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 8.2e-10 67.4 53 62.3
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 1.1e-09 67.0 56 62.5
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.4e-09 66.6 55 61.8
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 1.4e-09 66.6 69 52.2
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.4e-09 66.6 55 60.0
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.8e-09 66.2 48 64.6
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 1.8e-09 66.2 58 56.9
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 2.4e-09 65.9 51 66.7
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 2.4e-09 65.9 52 67.3
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.4e-09 65.9 48 62.5
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.4e-09 65.9 48 62.5
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 3.1e-09 65.5 63 54.0
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 6.9e-09 64.3 45 64.4
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 6.9e-09 64.3 45 64.4
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 6.9e-09 64.3 45 64.4
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 2.0e-08 62.8 38 73.7
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 2.6e-08 62.4 67 46.3
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.0e-07 60.5 56 55.4
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 1.3e-07 60.1 56 53.6
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 1.3e-07 60.1 56 55.4
Pp3c4_4750 Physcomitrium patens HOM05D008240 ORTHO05D010333 5.5e-06 54.7 50 52.0


User provided reference genes

Program Settings