Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 4.8e-49 197.6 106 100.0
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 1.7e-46 189.1 106 94.3
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.1e-45 186.4 105 96.2
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 2.2e-33 145.6 104 74.0
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.4e-32 142.9 108 70.4
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 4.1e-32 141.4 106 68.9
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 5.6e-29 131.0 104 67.3
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 9.5e-21 103.6 109 49.5
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 2.1e-20 102.4 114 51.8
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 2.8e-20 102.1 107 52.3
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 4.7e-20 101.3 107 52.3
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 6.2e-20 100.9 107 51.4
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 8.9e-19 97.1 108 50.0
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 8.9e-19 97.1 106 50.0
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 1.2e-18 96.7 110 50.0
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 9.8e-18 93.6 104 48.1
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 2.9e-17 92.0 93 52.7
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.9e-17 92.0 105 49.5
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 5.4e-16 87.8 122 43.4
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 9.2e-16 87.0 78 56.4
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 9.2e-16 87.0 103 45.6
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 1.6e-15 86.3 108 47.2
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 1.7e-14 82.8 100 44.0
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 1.7e-14 82.8 104 47.1
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 2.3e-14 82.4 119 42.9
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 2.3e-14 82.4 110 41.8
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 3.9e-14 81.6 117 46.2
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 5.1e-14 81.3 72 58.3
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 6.6e-14 80.9 107 40.2
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 8.6e-14 80.5 103 42.7
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 1.1e-13 80.1 114 40.4
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 1.5e-13 79.7 106 40.6
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 1.9e-13 79.3 113 44.2
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 1.9e-13 79.3 107 42.1
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 1.2e-12 76.6 106 43.4
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 2.8e-12 75.5 95 47.4
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 2.8e-12 75.5 108 38.9
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.8e-12 75.5 110 36.4
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.8e-12 75.5 110 38.2
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 6.2e-12 74.3 115 44.3
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 8.1e-12 73.9 115 43.5
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 8.1e-12 73.9 78 53.8
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 8.1e-12 73.9 103 40.8
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 8.1e-12 73.9 110 38.2
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 8.1e-12 73.9 75 46.7
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 1.1e-11 73.6 95 47.4
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 1.8e-11 72.8 106 41.5
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 3.1e-11 72.0 108 39.8
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 3.1e-11 72.0 105 39.0
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 8.9e-11 70.5 103 39.8
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 1.3e-09 66.6 72 43.1
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 1.7e-09 66.2 90 40.0
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 4.9e-09 64.7 105 37.1
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 2.7e-07 58.9 77 39.0
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 2.7e-07 58.9 76 39.5
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 4.6e-07 58.2 101 37.6
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 1.0e-06 57.0 77 40.3
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 1.3e-06 56.6 69 40.6
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 1.7e-06 56.2 73 49.3
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 5.1e-06 54.7 53 43.4
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 5.1e-06 54.7 35 54.3
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 6.6e-06 54.3 33 60.6
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 6.6e-06 54.3 33 60.6
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 8.6e-06 53.9 33 60.6
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 8.6e-06 53.9 33 60.6


User provided reference genes

Program Settings