Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 9.8e-253 876.3 443 100.0
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.3e-249 865.9 443 98.9
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.3e-241 839.3 443 96.6
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.4e-235 819.3 444 94.1
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 7.0e-235 817.0 444 93.5
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 5.0e-233 810.8 443 92.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 2.1e-218 762.3 445 87.6
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 5.3e-206 721.1 444 82.2
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.2e-197 693.3 444 79.7
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 4.5e-197 691.4 446 78.9
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 2.9e-196 688.7 453 77.7
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.9e-192 676.0 450 76.4
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 5.6e-192 674.5 445 77.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 2.1e-191 672.5 389 84.6
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 2.8e-191 672.2 420 80.7
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.2e-191 671.0 378 86.2
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 6.2e-191 671.0 395 84.1
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 8.2e-191 670.6 444 76.6
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.1e-190 670.2 390 84.6
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.1e-190 670.2 418 78.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 4.0e-190 668.3 436 77.1
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 4.0e-190 668.3 398 83.2
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.9e-190 667.5 383 84.9
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 9.0e-190 667.2 400 82.8
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.2e-189 666.8 398 82.7
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.5e-189 666.4 415 81.4
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.5e-189 666.4 392 83.4
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.5e-189 666.4 386 83.9
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.0e-189 666.0 390 85.1
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.0e-189 666.0 440 76.6
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.6e-189 665.6 440 75.7
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.4e-189 665.2 413 82.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 1.3e-188 663.3 423 79.4
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.3e-188 663.3 398 82.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 3.8e-188 661.8 407 80.8
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 3.8e-188 661.8 423 78.3
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.5e-188 661.0 386 83.9
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 6.5e-188 661.0 438 76.9
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 8.4e-188 660.6 432 76.6
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.1e-187 660.2 463 74.1
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.1e-187 660.2 479 73.3
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.4e-187 659.8 387 83.5
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.9e-187 659.4 423 78.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.5e-187 659.1 438 76.5
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.5e-187 659.1 447 76.1
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 3.2e-187 658.7 444 76.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.2e-187 658.7 395 82.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 4.2e-187 658.3 411 80.3
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.5e-187 657.9 432 76.4
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.3e-187 657.1 388 82.2
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 9.3e-187 657.1 410 80.5
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.2e-186 656.8 446 76.0
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.2e-186 656.8 431 78.2
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.7e-186 655.6 434 76.3
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 3.5e-186 655.2 401 80.8
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 3.5e-186 655.2 398 81.4
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 3.5e-186 655.2 385 83.6
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.6e-186 654.8 403 80.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 6.0e-186 654.4 422 77.5
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 6.0e-186 654.4 403 80.1
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 6.0e-186 654.4 422 78.2
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 7.9e-186 654.1 409 79.7
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 7.9e-186 654.1 386 83.2
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.0e-185 653.7 403 80.6
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.3e-185 652.5 409 79.5
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.3e-185 652.5 409 79.5
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.3e-185 652.5 395 80.8
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.0e-185 652.1 372 85.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 3.9e-185 651.7 388 83.8
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 3.9e-185 651.7 435 76.1
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 6.7e-185 651.0 403 80.6
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 8.7e-185 650.6 432 75.7
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.5e-184 649.8 400 81.0
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.5e-184 649.8 400 81.0
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.5e-184 649.8 391 81.3
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 2.5e-184 649.0 395 80.3
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 7.4e-184 647.5 397 79.3
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 7.4e-184 647.5 394 79.7
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 9.7e-184 647.1 402 80.3
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 9.7e-184 647.1 390 81.8
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.2e-183 646.0 401 79.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.8e-183 645.6 386 81.9
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 2.8e-183 645.6 442 74.2
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.8e-183 645.6 518 66.8
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 6.3e-183 644.4 391 80.8
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.1e-182 643.7 387 82.7
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.4e-182 643.3 442 74.2
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.8e-182 642.9 416 78.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.1e-182 642.1 408 79.2
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 5.3e-182 641.3 442 74.4
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 6.9e-182 641.0 390 82.8
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 9.0e-182 640.6 416 75.7
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.5e-181 639.8 375 83.7
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 2.2e-180 636.0 391 80.6
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.5e-179 631.3 384 80.5
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.4e-179 630.6 378 82.0
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 9.4e-179 630.6 408 77.2
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.0e-176 622.9 366 82.8
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.7e-176 621.3 368 82.6
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.9e-174 614.4 442 69.2
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 2.6e-173 612.5 442 69.0
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.1e-168 597.0 388 74.5
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.0e-168 596.3 446 70.6
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.1e-166 589.0 328 87.2
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 9.1e-166 587.4 386 73.3
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.2e-165 587.0 385 72.5
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 6.5e-164 581.3 364 75.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.5e-160 570.1 447 68.2
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 4.8e-159 565.1 377 75.9
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.1e-155 553.9 419 69.2
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 8.0e-154 547.7 397 70.0
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.8e-153 546.6 404 68.6
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 9.4e-147 524.2 374 68.4
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.0e-144 516.5 287 87.1
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.6e-141 506.9 454 59.3
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 2.5e-139 499.6 419 58.5
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-137 494.2 287 81.9
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 4.5e-133 478.8 325 74.8
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 5.9e-133 478.4 376 67.3
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.3e-129 466.5 378 60.1
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.2e-128 464.2 273 84.2
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.4e-119 431.8 288 71.9
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.8e-113 413.7 233 86.7
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.6e-109 400.6 450 52.9
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.8e-109 398.3 314 64.0
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.4e-94 350.1 224 73.2
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.2e-86 322.8 256 65.2
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 4.8e-82 309.3 243 64.6
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 4.6e-77 292.7 299 48.2
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.0e-72 277.3 273 57.1
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.6e-72 276.9 161 84.5
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 2.9e-71 273.5 246 58.1
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.0e-68 265.0 355 43.9
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 3.1e-57 226.9 346 42.5
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 9.1e-57 225.3 209 61.7
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.1e-51 208.4 177 66.7
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.8e-44 184.5 184 57.6
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-44 182.2 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.6e-29 134.8 95 70.5
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-27 127.1 83 72.3
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-27 127.1 83 72.3
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 5.4e-25 119.8 137 50.4
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 5.4e-25 119.8 137 50.4
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.1e-21 106.3 71 70.4
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 6.8e-20 102.8 113 52.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 6.8e-20 102.8 69 68.1
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.5e-19 101.7 73 63.0
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 2.7e-08 64.3 36 77.8


User provided reference genes

Program Settings