Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 2.4e-57 225.3 116 100.0
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 9.0e-57 223.4 116 99.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.8e-47 191.4 101 97.0
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 3.6e-45 184.9 116 86.2
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.1e-37 159.1 110 76.4
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 4.4e-35 151.4 93 84.9
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.4e-35 150.6 102 78.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.8e-31 138.3 119 68.1
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.5e-24 115.2 93 66.7
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.5e-24 114.8 91 70.3
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.7e-24 114.0 95 58.9
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.8e-23 111.7 106 56.6
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 8.5e-23 110.5 107 53.3
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-22 110.2 106 55.7
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 4.2e-22 108.2 96 59.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 4.2e-22 108.2 106 51.9
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 5.5e-22 107.8 105 49.5
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.6e-21 106.3 112 51.8
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.1e-21 105.9 105 52.4
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.6e-21 105.1 105 50.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.7e-21 104.8 96 52.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 6.1e-21 104.4 86 57.0
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.0e-20 103.6 106 48.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.0e-20 103.6 106 50.0
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-20 103.6 105 49.5
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 2.3e-20 102.4 96 51.0
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.0e-20 102.1 105 49.5
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.6e-19 99.0 94 57.4
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 4.4e-19 98.2 84 66.7
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.4e-19 98.2 98 55.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.7e-19 97.8 105 47.6
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 5.7e-19 97.8 116 46.6
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 5.7e-19 97.8 87 52.9
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 5.7e-19 97.8 87 52.9
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 9.7e-19 97.1 87 55.2
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.8e-18 95.5 106 49.1
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.8e-18 95.5 108 45.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.7e-18 95.1 114 44.7
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.7e-18 95.1 114 46.5
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 8.3e-18 94.0 96 47.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.1e-17 93.6 88 50.0
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.1e-17 93.6 86 54.7
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.1e-17 93.6 96 51.0
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.1e-17 93.6 106 45.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.8e-17 92.8 102 47.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.8e-17 92.8 106 50.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.4e-17 92.4 80 65.0
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 3.1e-17 92.0 103 47.6
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.1e-17 91.7 110 49.1
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 4.1e-17 91.7 94 52.1
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.1e-17 91.7 96 47.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.0e-17 90.9 97 44.3
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 7.0e-17 90.9 103 46.6
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-16 90.1 86 47.7
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-16 90.1 86 47.7
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.2e-16 90.1 104 46.2
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.6e-16 89.7 106 48.1
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 2.0e-16 89.4 87 56.3
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-16 89.4 89 55.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.7e-16 89.0 100 45.0
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-16 89.0 90 56.7
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.5e-16 88.6 92 51.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.5e-16 88.2 100 45.0
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.0e-15 87.0 112 45.5
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.0e-15 87.0 112 45.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.3e-15 86.7 88 45.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-15 86.7 87 50.6
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.3e-15 86.7 95 47.4
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.7e-15 86.3 114 45.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.7e-15 86.3 107 46.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 92 50.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.9e-15 85.5 110 46.4
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.9e-15 85.5 87 51.7
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.9e-15 85.5 85 51.8
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.8e-15 85.1 85 51.8
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 3.8e-15 85.1 109 45.9
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.5e-15 84.3 91 45.1
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.5e-15 84.3 92 48.9
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.5e-15 84.3 107 46.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 6.5e-15 84.3 93 47.3
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 8.5e-15 84.0 114 43.0
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.1e-14 83.6 106 45.3
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.1e-14 83.6 102 46.1
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.1e-14 83.6 92 50.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.9e-14 82.8 100 40.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.5e-14 82.4 85 49.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.5e-14 82.4 85 49.4
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.2e-14 81.6 79 51.9
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 5.5e-14 81.3 87 48.3
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 7.2e-14 80.9 109 43.1
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 7.2e-14 80.9 106 38.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 85 49.4
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 85 49.4
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 3.6e-13 78.6 94 44.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 6.1e-13 77.8 93 45.2
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.0e-12 77.0 94 42.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.0e-12 77.0 96 43.8
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.0e-12 77.0 104 47.1
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.3e-12 75.9 111 43.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.3e-12 75.9 95 48.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 3.0e-12 75.5 114 42.1
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.0e-12 75.5 98 42.9
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 4.0e-12 75.1 87 44.8
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.0e-12 75.1 98 42.9
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 6.8e-12 74.3 100 47.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 8.8e-12 73.9 60 60.0
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 7.5e-11 70.9 91 46.2
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 2.2e-10 69.3 69 47.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.8e-10 68.9 88 48.9
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 6.3e-10 67.8 105 38.1
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 9.1e-09 63.9 79 41.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 9.1e-09 63.9 107 38.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 9.1e-09 63.9 86 43.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 3.5e-08 62.0 58 51.7
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 4.5e-08 61.6 108 37.0
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 7.7e-08 60.8 109 37.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 7.7e-08 60.8 87 37.9
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 7.7e-08 60.8 87 37.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 7.7e-08 60.8 109 37.6
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 7.7e-08 60.8 87 37.9
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.3e-07 60.1 87 36.8
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.7e-07 59.7 107 36.4
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.7e-07 59.7 108 37.0
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 1.7e-07 59.7 95 36.8
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.3e-07 59.3 107 36.4
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-07 59.3 108 38.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.9e-07 58.9 87 37.9
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.9e-07 58.9 123 34.1
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.8e-07 58.5 78 41.0
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.6e-07 57.8 124 34.7
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 6.6e-07 57.8 108 38.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.1e-06 57.0 123 33.3
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-06 56.6 88 38.6
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-06 56.6 109 36.7
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-06 56.2 108 32.4
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.9e-06 56.2 111 34.2
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.5e-06 55.8 124 33.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 3.3e-06 55.5 95 32.6
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.3e-06 55.5 123 31.7
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.3e-06 55.5 123 31.7
arahy.Tifrunner.gnm1.ann1.6X23CA Arachis hypogaea HOM05D005226 ORTHO05D004666 4.2e-06 55.1 76 46.1
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 4.2e-06 55.1 121 34.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 4.2e-06 55.1 123 30.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 4.2e-06 55.1 87 34.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 4.2e-06 55.1 123 30.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 4.2e-06 55.1 87 34.5
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.2e-06 54.3 122 32.0
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 9.5e-06 53.9 108 33.3
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 9.5e-06 53.9 130 32.3


User provided reference genes

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