Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 2.2e-63 246.1 196 100.0
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 6.0e-61 238.0 206 95.1
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 2.9e-55 219.2 201 86.6
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 5.3e-49 198.4 201 88.1
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 9.0e-41 171.0 197 69.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 1.2e-40 170.6 196 71.9
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.6e-40 169.5 196 74.5
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 5.8e-40 168.3 197 74.1
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.9e-39 166.0 196 54.1
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 6.4e-39 164.9 197 73.6
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 8.4e-39 164.5 89 96.6
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.1e-38 164.1 196 71.9
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.2e-37 160.6 196 68.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.2e-37 160.6 196 66.8
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-37 159.8 194 69.1
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.5e-37 159.1 194 69.1
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 6.0e-37 158.3 195 70.8
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.3e-36 157.1 190 65.3
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.3e-36 157.1 195 65.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.0e-36 156.0 194 68.6
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 5.1e-36 155.2 188 66.0
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.5e-35 153.7 190 61.6
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 3.3e-35 152.5 195 74.9
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.6e-35 151.8 190 57.9
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 1.3e-34 150.6 196 59.7
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.3e-34 150.6 190 69.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.6e-34 150.2 201 66.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.8e-34 149.4 190 51.1
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 3.7e-34 149.1 190 65.3
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 6.2e-34 148.3 198 64.6
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 6.9e-33 144.8 197 63.5
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 9.0e-33 144.4 194 49.5
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 2.0e-32 143.3 196 53.1
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 5.8e-32 141.7 186 61.3
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.8e-32 141.7 186 60.8
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 5.8e-32 141.7 196 60.2
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 9.9e-32 141.0 198 57.6
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 9.9e-32 141.0 197 63.5
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.3e-31 140.6 97 72.2
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.7e-31 140.2 96 71.9
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 2.2e-31 139.8 95 73.7
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 4.9e-31 138.7 219 65.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 8.4e-31 137.9 97 71.1
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 1.4e-30 137.1 97 70.1
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.9e-30 136.7 97 70.1
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.9e-30 136.7 196 60.2
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 2.5e-30 136.3 99 68.7
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 3.2e-30 136.0 97 69.1
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 5.5e-30 135.2 95 70.5
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 7.1e-30 134.8 97 69.1
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 7.1e-30 134.8 97 69.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.6e-29 133.7 190 51.1
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 3.5e-29 132.5 229 48.0
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 7.9e-29 131.3 97 66.0
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.0e-28 131.0 93 69.9
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.3e-28 130.6 97 67.0
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.3e-28 130.6 97 67.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.8e-28 130.2 234 55.1
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 3.9e-28 129.0 184 65.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 3.9e-28 129.0 93 68.8
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 5.1e-28 128.6 97 64.9
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.3e-27 125.9 96 59.4
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 7.4e-27 124.8 210 66.2
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.1e-26 123.2 95 65.3
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.8e-26 122.9 176 56.8
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.8e-26 122.1 200 58.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 4.8e-26 122.1 95 65.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 6.2e-26 121.7 237 56.5
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 8.2e-26 121.3 88 65.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 8.2e-26 121.3 176 49.4
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-25 120.9 95 64.2
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.4e-25 120.6 246 50.8
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 3.1e-25 119.4 86 69.8
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 3.1e-25 119.4 239 55.2
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 3.1e-25 119.4 85 68.2
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.6e-24 116.3 85 71.8
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 3.4e-24 115.9 96 61.5
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 5.8e-24 115.2 97 56.7
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 7.6e-24 114.8 96 60.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 7.6e-24 114.8 84 65.5
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 7.6e-24 114.8 91 56.0
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.0e-23 114.4 95 57.9
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 4.9e-23 112.1 85 67.1
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 8.4e-23 111.3 85 65.9
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 7.9e-21 104.8 220 57.7
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.3e-20 104.0 77 67.5
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.8e-20 103.6 165 58.8
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 6.7e-20 101.7 89 64.0
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 8.7e-20 101.3 86 58.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.5e-19 100.5 94 56.4
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.5e-19 100.5 97 56.7
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.9e-19 100.1 130 90.0
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 3.3e-19 99.4 79 65.8
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 5.7e-19 98.6 94 52.1
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 5.7e-19 98.6 94 52.1
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 5.7e-19 98.6 97 57.7
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 5.7e-19 98.6 94 52.1
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 9.7e-19 97.8 196 56.6
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.6e-18 97.1 95 54.7
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 2.8e-18 96.3 97 56.7
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.8e-18 96.3 96 51.0
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 6.3e-18 95.1 91 51.6
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 6.3e-18 95.1 91 51.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 8.2e-18 94.7 159 45.9
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.7e-15 87.0 97 49.5
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.2e-15 86.7 81 61.7
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 6.5e-15 85.1 80 63.8
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.4e-14 84.0 79 60.8
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 4.2e-14 82.4 85 54.1
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 4.2e-14 82.4 85 54.1
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 3.6e-13 79.3 80 61.2
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 7.9e-13 78.2 51 72.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.8e-12 77.0 89 48.3
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.5e-11 73.9 80 48.8
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.3e-10 70.9 75 52.0
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 8.2e-10 68.2 88 44.3
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 1.8e-09 67.0 48 66.7
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 5.3e-09 65.5 68 52.9
SalBow6G4228 Salvia bowleyana HOM05D006504 ORTHO05D007867 2.0e-08 63.5 35 80.0
SalBow6G4685 Salvia bowleyana HOM05D006504 ORTHO05D007867 2.0e-08 63.5 35 80.0
unitig_748.g8021 Utricularia gibba HOM05D000360 ORTHO05D000234 2.6e-08 63.2 39 69.2
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 5.0e-07 58.9 93 37.6
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 1.4e-06 57.4 34 79.4
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 2.5e-06 56.6 60 45.0
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.2e-06 56.2 97 41.2


User provided reference genes

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