Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 5.5e-185 651.0 365 100.0
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.4e-183 646.4 365 99.5
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 2.7e-139 499.2 374 76.7
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 7.8e-139 497.7 374 70.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.5e-137 492.7 373 70.8
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.5e-137 490.7 374 73.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.7e-133 479.9 385 72.2
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 6.8e-127 458.0 372 66.4
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.4e-126 455.3 350 70.6
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 5.8e-126 454.9 352 71.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.9e-126 454.1 350 70.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.1e-121 440.7 375 72.5
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.5e-121 440.3 376 72.3
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 1.5e-121 440.3 374 69.5
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 4.8e-120 435.3 364 65.1
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.8e-119 433.3 369 66.7
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.2e-118 430.6 369 66.7
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 9.9e-118 427.6 373 61.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.7e-117 426.8 376 65.2
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.9e-116 423.3 373 61.4
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 3.2e-116 422.5 375 64.5
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 3.2e-116 422.5 377 65.0
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 4.2e-116 422.2 371 67.7
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 7.1e-116 421.4 379 68.9
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 9.3e-116 421.0 415 61.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.6e-115 418.7 378 70.4
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 6.0e-115 418.3 398 62.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 7.9e-115 417.9 373 61.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.0e-114 417.5 375 60.5
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.0e-114 417.5 351 69.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.0e-114 417.5 377 64.2
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.6e-114 414.8 377 63.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.1e-113 414.1 375 60.3
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 7.3e-113 411.4 355 62.8
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 9.6e-113 411.0 421 57.2
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 8.1e-112 407.9 377 57.8
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.1e-111 407.5 368 61.4
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 3.1e-111 406.0 368 61.1
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 9.0e-111 404.4 347 63.4
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.2e-110 404.1 354 61.6
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.2e-110 404.1 367 60.5
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.5e-110 403.7 377 63.9
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 4.5e-110 402.1 373 62.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 9.9e-110 401.0 380 57.6
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.3e-109 400.6 356 62.4
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 2.9e-109 399.4 387 64.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.9e-109 399.4 373 58.4
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.8e-109 399.1 422 54.0
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 3.8e-109 399.1 426 62.4
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.9e-109 398.7 368 60.3
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 6.4e-109 398.3 371 65.2
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 2.4e-108 396.4 345 64.9
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.2e-108 396.0 370 60.5
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.2e-108 395.6 372 63.2
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 9.3e-108 394.4 375 62.4
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.2e-107 394.0 355 61.4
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 2.1e-107 393.3 353 66.3
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 7.9e-107 391.3 375 60.3
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-106 391.0 374 68.7
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.1e-106 388.7 389 58.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 6.7e-106 388.3 353 59.2
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.3e-105 386.0 353 65.7
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.8e-104 382.9 355 60.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 4.8e-104 382.1 393 56.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 8.1e-104 381.3 355 65.4
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 6.9e-103 378.3 379 57.5
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 9.0e-103 377.9 372 61.0
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 2.6e-102 376.3 349 62.5
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 5.8e-102 375.2 376 58.5
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 7.6e-102 374.8 442 51.8
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 2.2e-101 373.2 355 61.1
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.8e-101 372.5 360 65.3
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 3.8e-101 372.5 377 59.7
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.8e-101 372.5 344 59.6
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.9e-100 370.2 360 65.0
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 5.5e-100 368.6 378 59.0
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 7.1e-100 368.2 372 57.8
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 9.3e-100 367.9 351 56.1
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 9.3e-100 367.9 374 59.1
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.1e-99 366.7 373 63.5
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.3e-98 364.0 373 61.7
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.0e-98 362.8 369 57.2
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 2.5e-97 359.8 370 59.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.1e-95 354.4 351 57.3
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.4e-95 354.0 374 55.3
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 2.4e-95 353.2 363 56.5
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.2e-94 350.9 372 60.5
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 4.5e-94 349.0 370 56.5
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 5.8e-94 348.6 357 62.5
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.7e-93 347.1 349 57.9
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 3.8e-93 345.9 401 53.4
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.1e-92 344.4 353 58.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 7.2e-92 341.7 351 62.4
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 4.6e-91 339.0 354 62.4
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.0e-90 337.8 379 56.7
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 1.0e-90 337.8 357 58.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 5.1e-90 335.5 354 54.5
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-89 334.0 360 55.3
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 3.3e-89 332.8 371 56.3
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 8.2e-88 328.2 356 56.5
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.4e-87 327.4 361 58.4
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 1.8e-87 327.0 372 57.5
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 1.8e-87 327.0 372 57.5
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.8e-87 327.0 372 56.7
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 9.0e-87 324.7 388 55.4
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 4.5e-86 322.4 353 53.3
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.7e-86 321.6 415 51.6
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.0e-85 321.2 355 52.4
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 6.5e-85 318.5 385 51.2
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 1.1e-84 317.8 354 59.0
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 4.6e-83 312.4 374 53.2
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.9e-82 309.3 304 59.9
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.9e-82 309.3 395 54.4
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 6.7e-82 308.5 349 52.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.1e-81 307.8 500 44.6
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.5e-81 307.4 389 48.6
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.3e-80 304.3 353 53.5
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 1.3e-80 304.3 480 46.5
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.4e-79 300.8 279 60.9
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 3.1e-79 299.7 350 54.9
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.2e-76 289.7 313 58.1
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.7e-75 286.6 333 50.8
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 7.4e-73 278.5 396 49.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.8e-72 275.8 185 75.1
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.1e-71 274.6 339 51.6
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.4e-71 273.5 191 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 2.3e-66 256.9 392 45.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 8.8e-66 255.0 403 51.1
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 2.5e-60 236.9 372 44.9
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 9.4e-60 235.0 167 71.9
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.8e-56 223.4 303 52.8
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.8e-56 223.4 303 52.8
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 8.5e-53 211.8 271 56.1
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 8.0e-51 205.3 201 57.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.0e-50 204.9 249 49.8
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.4e-49 199.5 225 60.0
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.7e-46 190.3 98 89.8
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 3.8e-45 186.4 321 42.1
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-43 180.6 99 86.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-43 180.6 99 86.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 2.2e-40 170.6 223 47.1
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.2e-38 164.9 149 64.4
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 2.7e-38 163.7 93 86.0
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 7.3e-36 155.6 697 27.5
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.5e-30 136.7 93 75.3
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 4.3e-28 129.8 211 44.1
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 5.2e-26 122.9 223 45.7
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 4.4e-25 119.8 179 53.1
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 5.8e-25 119.4 70 77.1
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 7.5e-25 119.0 138 51.4
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.3e-24 118.2 111 52.3
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 3.2e-23 113.6 181 44.2
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-22 110.5 76 69.7
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 3.5e-22 110.2 356 30.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 7.8e-22 109.0 120 44.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-20 105.1 65 76.9
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.6e-11 74.7 63 57.1
CAN.G270.3 Capsicum annuum HOM05D004432 ORTHO05D005427 2.7e-06 57.4 46 63.0
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 4.6e-06 56.6 74 44.6
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 6.0e-06 56.2 58 48.3
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 6.0e-06 56.2 45 68.9


User provided reference genes

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