Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g010040 Solanum pennellii HOM05D000248 ORTHO05D024784 2.1e-67 258.8 127 100.0
Solyc02g031750.3 Solanum lycopersicum HOM05D000248 ORTHO05D024784 1.4e-66 256.1 127 99.2
PGSC0003DMG401024369 Solanum tuberosum HOM05D000248 ORTHO05D024784 5.8e-57 224.2 121 88.4
CAN.G23.13 Capsicum annuum HOM05D000248 ORTHO05D024784 5.3e-42 174.5 127 68.5
PGSC0003DMG402010355 Solanum tuberosum HOM05D000248 ORTHO05D000146 7.4e-12 74.3 113 42.5
Aa31LG6G2320 Aethionema arabicum HOM05D000248 ORTHO05D000146 9.7e-12 73.9 123 39.0
Sopen02g018100 Solanum pennellii HOM05D000248 ORTHO05D000146 1.7e-11 73.2 113 42.5
SGA_v2.0_scaffold298G47681 Striga asiatica HOM05D000248 ORTHO05D000146 1.7e-11 73.2 123 41.5
Nitab4.5_0002056g0070 Nicotiana tabacum HOM05D000248 ORTHO05D000146 4.8e-11 71.6 113 41.6
Nitab4.5_0003773g0020 Nicotiana tabacum HOM05D000248 ORTHO05D000146 6.3e-11 71.2 113 41.6
AL2G22050 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 1.4e-10 70.1 123 37.4
HPP92_014205 Vanilla planifolia HOM05D000248 ORTHO05D000146 1.4e-10 70.1 123 39.0
HPP92_026464 Vanilla planifolia HOM05D000248 ORTHO05D000146 1.4e-10 70.1 123 39.0
Solyc02g069020.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 1.8e-10 69.7 113 41.6
CAN.G519.7 Capsicum annuum HOM05D000248 ORTHO05D000146 2.4e-10 69.3 108 42.6
Glyma.20G021500 Glycine max HOM05D000248 ORTHO05D000146 2.4e-10 69.3 122 39.3
Carub.0008s0319 Capsella rubella HOM05D000248 ORTHO05D000146 4.1e-10 68.6 125 39.2
Cc09_g06220 Coffea canephora HOM05D000248 ORTHO05D000146 4.1e-10 68.6 112 43.8
Peaxi162Scf00149g00813 Petunia axillaris HOM05D000248 ORTHO05D000146 5.3e-10 68.2 113 41.6
vmacro03508 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 5.3e-10 68.2 123 42.3
AL7G34230 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 6.9e-10 67.8 126 36.5
Cfa000721 Carpinus fangiana HOM05D000248 ORTHO05D000146 6.9e-10 67.8 113 41.6
Migut.M01974 Erythranthe guttata HOM05D000248 ORTHO05D000146 6.9e-10 67.8 125 40.0
Prupe.4G110500 Prunus persica HOM05D000248 ORTHO05D000146 6.9e-10 67.8 113 42.5
PGR042G3762 Punica granatum HOM05D000248 ORTHO05D000146 6.9e-10 67.8 123 36.6
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 9.1e-10 67.4 123 39.0
AL65U10050 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 9.1e-10 67.4 121 34.7
GSVIVG01012084001 Vitis vinifera HOM05D000248 ORTHO05D000146 9.1e-10 67.4 123 40.7
MSTRG.16340 Avicennia marina HOM05D000248 ORTHO05D000146 1.2e-09 67.0 125 39.2
Lalb_Chr16g0385281 Lupinus albus HOM05D000248 ORTHO05D000146 1.2e-09 67.0 123 37.4
arahy.Tifrunner.gnm1.ann1.ZZ7G8M Arachis hypogaea HOM05D000248 ORTHO05D000146 1.5e-09 66.6 122 39.3
BcaC09g51364 Brassica carinata HOM05D000248 ORTHO05D000146 1.5e-09 66.6 121 38.0
Glyma.07G222500 Glycine max HOM05D000248 ORTHO05D000146 1.5e-09 66.6 122 38.5
CiPaw.09G078400 Carya illinoinensis HOM05D000248 ORTHO05D000146 2.0e-09 66.2 123 39.8
Lj2A352T45 Lonicera japonica HOM05D000248 ORTHO05D000146 2.0e-09 66.2 123 40.7
Oeu050057.1 Olea europaea HOM05D000248 ORTHO05D000146 2.0e-09 66.2 125 38.4
Rhsim13G0131500 Rhododendron simsii HOM05D000248 ORTHO05D000146 2.0e-09 66.2 123 42.3
arahy.Tifrunner.gnm1.ann1.6F5IGY Arachis hypogaea HOM05D000248 ORTHO05D000146 2.6e-09 65.9 122 39.3
A01p11720 Brassica napus HOM05D000248 ORTHO05D000146 2.6e-09 65.9 123 38.2
BraA01t01114Z Brassica rapa HOM05D000248 ORTHO05D000146 2.6e-09 65.9 123 38.2
RhsimUnG0089300 Rhododendron simsii HOM05D000248 ORTHO05D000146 2.6e-09 65.9 123 42.3
Medtr4g083970 Medicago truncatula HOM05D000248 ORTHO05D000146 3.4e-09 65.5 126 37.3
Potri.012G120400 Populus trichocarpa HOM05D000248 ORTHO05D000146 3.4e-09 65.5 126 37.3
PGSC0003DMG400010372 Solanum tuberosum HOM05D000248 ORTHO05D000146 4.5e-09 65.1 119 37.8
Solyc02g069040.4 Solanum lycopersicum HOM05D000248 ORTHO05D000146 5.9e-09 64.7 119 38.7
MD05G1253400 Malus domestica HOM05D000248 ORTHO05D000146 7.7e-09 64.3 112 39.3
Prupe.4G107600 Prunus persica HOM05D000248 ORTHO05D000146 7.7e-09 64.3 114 40.4
CSS0043860 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 1.0e-08 63.9 126 40.5
Carub.0007s2136 Capsella rubella HOM05D000248 ORTHO05D000146 1.0e-08 63.9 123 37.4
Glyma.20G021200 Glycine max HOM05D000248 ORTHO05D000146 1.0e-08 63.9 122 38.5
Lsat_1_v5_gn_5_36281 Lactuca sativa HOM05D000248 ORTHO05D000146 1.0e-08 63.9 122 36.9
Lj4g0006685 Lotus japonicus HOM05D000248 ORTHO05D000146 1.0e-08 63.9 122 37.7
Phvul.002G098900 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 1.0e-08 63.9 122 36.1
VMungo0251G0674 Vigna mungo HOM05D000248 ORTHO05D000146 1.0e-08 63.9 122 36.1
AT1G65390 Arabidopsis thaliana HOM05D000005 ORTHO05D000146 1.3e-08 63.5 123 33.3
Hma1.2p1_0040F.1_g025210 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 1.3e-08 63.5 123 39.8
Prupe.4G107700 Prunus persica HOM05D000248 ORTHO05D000146 1.3e-08 63.5 113 38.1
Aa31LG9G8030 Aethionema arabicum HOM05D000248 ORTHO05D000146 1.7e-08 63.2 126 38.1
CAN.G519.6 Capsicum annuum HOM05D000248 ORTHO05D000146 1.7e-08 63.2 125 37.6
Hund23500 Selenicereus undatus HOM05D000248 ORTHO05D000146 1.7e-08 63.2 122 36.1
Sopen02g018120 Solanum pennellii HOM05D000248 ORTHO05D000146 1.7e-08 63.2 119 37.8
SalBow8G2337 Salvia bowleyana HOM05D000248 ORTHO05D000146 2.2e-08 62.8 112 42.9
SalBow8G3348 Salvia bowleyana HOM05D000248 ORTHO05D000146 2.2e-08 62.8 112 42.9
Sp7g18350 Schrenkiella parvula HOM05D000248 ORTHO05D000146 2.2e-08 62.8 124 40.3
Haze_06029 Corylus avellana HOM05D000248 ORTHO05D000146 2.9e-08 62.4 111 40.5
MD05G1254200 Malus domestica HOM05D000248 ORTHO05D000146 2.9e-08 62.4 112 38.4
Actinidia22390 Actinidia chinensis HOM05D000248 ORTHO05D000146 3.8e-08 62.0 126 38.9
BcaC09g51365 Brassica carinata HOM05D000248 ORTHO05D000146 3.8e-08 62.0 126 34.1
Glyma.20G021000 Glycine max HOM05D000248 ORTHO05D000146 3.8e-08 62.0 122 36.9
BcaNung01748 Brassica carinata HOM05D000248 ORTHO05D000146 5.0e-08 61.6 123 35.8
Duzib177G0628 Durio zibethinus HOM05D000248 ORTHO05D000146 5.0e-08 61.6 123 34.1
Thhalv10026213m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 5.0e-08 61.6 125 36.8
Psat7g130840 Pisum sativum HOM05D000248 ORTHO05D000146 5.0e-08 61.6 123 36.6
PSO675G7130 Papaver somniferum HOM05D000248 ORTHO05D000146 6.5e-08 61.2 125 34.4
Psat7g137440 Pisum sativum HOM05D000248 ORTHO05D000146 6.5e-08 61.2 124 37.1
Eucgr.E01960 Eucalyptus grandis HOM05D000248 ORTHO05D000146 8.5e-08 60.8 122 37.7
FAN16G2898 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.1e-07 60.5 112 37.5
MD05G1355300 Malus domestica HOM05D000248 ORTHO05D000146 1.1e-07 60.5 115 34.8
QL11p018028 Quercus lobata HOM05D000248 ORTHO05D000146 1.1e-07 60.5 123 39.0
Sp2g09870 Schrenkiella parvula HOM05D000248 ORTHO05D000146 1.1e-07 60.5 126 36.5
C01p13900 Brassica napus HOM05D000248 ORTHO05D000146 1.4e-07 60.1 119 36.1
Ca_18768_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 1.4e-07 60.1 122 36.9
vmacro03512 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 1.4e-07 60.1 113 40.7
Glyma.20G020900 Glycine max HOM05D000248 ORTHO05D000146 1.9e-07 59.7 122 36.1
HanXRQChr12g0378211 Helianthus annuus HOM05D000248 ORTHO05D000146 1.9e-07 59.7 120 38.3
TWI38G2162 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 1.9e-07 59.7 122 37.7
Cfa017672 Carpinus fangiana HOM05D000248 ORTHO05D000146 2.5e-07 59.3 123 36.6
ECA246G2098 Erigeron canadensis HOM05D000248 ORTHO05D000146 2.5e-07 59.3 123 38.2
QL11p010488 Quercus lobata HOM05D000248 ORTHO05D000146 2.5e-07 59.3 122 33.6
Eucgr.F02470 Eucalyptus grandis HOM05D000248 ORTHO05D000146 3.2e-07 58.9 125 34.4
FvH4_3g12180 Fragaria vesca HOM05D000248 ORTHO05D000146 3.2e-07 58.9 112 37.5
Lsat_1_v5_gn_5_36341 Lactuca sativa HOM05D000248 ORTHO05D000146 3.2e-07 58.9 122 37.7
MBI01_g44880_MAGBIO Magnolia biondii HOM05D000248 ORTHO05D000146 3.2e-07 58.9 125 36.0
Sc24g0000100 Simmondsia chinensis HOM05D000248 ORTHO05D000146 3.2e-07 58.9 122 37.7
Thecc.06G141400 Theobroma cacao HOM05D000248 ORTHO05D000146 3.2e-07 58.9 123 35.8
Cfa009874 Carpinus fangiana HOM05D000248 ORTHO05D000146 4.2e-07 58.5 123 33.3
DCAR_004324 Daucus carota HOM05D000248 ORTHO05D000146 4.2e-07 58.5 123 37.4
Gohir.D06G203300 Gossypium hirsutum HOM05D000248 ORTHO05D000146 4.2e-07 58.5 128 35.2
PSO170G6818 Papaver somniferum HOM05D000248 ORTHO05D000146 4.2e-07 58.5 129 34.9
PSO675G0473 Papaver somniferum HOM05D000248 ORTHO05D000146 4.2e-07 58.5 129 34.9
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 5.5e-07 58.2 123 33.3
Ciclev10016359m.g Citrus clementina HOM05D000248 ORTHO05D000146 5.5e-07 58.2 122 36.9
Duzib177G0556 Durio zibethinus HOM05D000248 ORTHO05D000146 5.5e-07 58.2 123 34.1
MD05G1253200 Malus domestica HOM05D000248 ORTHO05D000146 5.5e-07 58.2 122 35.2
Sed0026007 Sechium edule HOM05D000248 ORTHO05D000146 5.5e-07 58.2 125 32.0
CiPaw.09G078500 Carya illinoinensis HOM05D000248 ORTHO05D000146 7.2e-07 57.8 112 39.3
Manes.03G070740 Manihot esculenta HOM05D000248 ORTHO05D000146 7.2e-07 57.8 126 38.1
Prupe.8G030200 Prunus persica HOM05D000248 ORTHO05D000146 7.2e-07 57.8 122 35.2
FAN21G1612 Fragaria x ananassa HOM05D000248 ORTHO05D000146 9.4e-07 57.4 112 36.6
Gorai.010G237200 Gossypium raimondii HOM05D000248 ORTHO05D000146 9.4e-07 57.4 128 33.6
Thhalv10001123m.g Eutrema salsugineum HOM05D000248 ORTHO05D004260 1.2e-06 57.0 125 31.2
TPR.G20975 Trifolium pratense HOM05D000248 ORTHO05D000146 1.2e-06 57.0 124 35.5
Aqoxy4G00216 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 1.6e-06 56.6 122 33.6
Duzib177G0069 Durio zibethinus HOM05D000248 ORTHO05D000146 1.6e-06 56.6 123 34.1
CARHR033320 Cardamine hirsuta HOM05D000248 ORTHO05D000146 2.1e-06 56.2 123 31.7
CiPaw.13G150100 Carya illinoinensis HOM05D000248 ORTHO05D000146 2.1e-06 56.2 122 30.3
Thhalv10001121m.g Eutrema salsugineum HOM05D000005 ORTHO05D004260 2.1e-06 56.2 123 30.9
Lsat_1_v5_gn_5_36381 Lactuca sativa HOM05D000248 ORTHO05D000146 2.1e-06 56.2 117 38.5
PSO541G4482 Papaver somniferum HOM05D000248 ORTHO05D000146 2.1e-06 56.2 129 33.3
QL04p053566 Quercus lobata HOM05D000248 ORTHO05D000146 2.1e-06 56.2 118 33.9
Sc02g0005710 Simmondsia chinensis HOM05D000248 ORTHO05D000146 2.1e-06 56.2 122 35.2
Eucgr.E01891 Eucalyptus grandis HOM05D000248 ORTHO05D000146 2.7e-06 55.8 121 36.4
Os01g0158400 Oryza sativa ssp. japonica HOM05D000248 ORTHO05D000146 2.7e-06 55.8 123 35.8
TAR627G0212 Trochodendron aralioides HOM05D000248 ORTHO05D000146 2.7e-06 55.8 113 37.2
Carub.0008s0317 Capsella rubella HOM05D000005 ORTHO05D000146 3.6e-06 55.5 123 35.8
CARHR177540 Cardamine hirsuta HOM05D000005 ORTHO05D004260 3.6e-06 55.5 126 30.2
Eucgr.E01892 Eucalyptus grandis HOM05D000248 ORTHO05D000146 3.6e-06 55.5 124 34.7
BcaC07g41807 Brassica carinata HOM05D000248 ORTHO05D004260 4.7e-06 55.1 123 33.3
Haze_23999 Corylus avellana HOM05D000248 ORTHO05D000146 4.7e-06 55.1 125 34.4
TAR103G0002 Trochodendron aralioides HOM05D000248 ORTHO05D000146 4.7e-06 55.1 132 28.0
Ah.14g088120 Amaranthus hybridus HOM05D000248 ORTHO05D000146 6.1e-06 54.7 121 32.2
AL8G14290 Arabidopsis lyrata HOM05D000005 ORTHO05D004260 6.1e-06 54.7 125 31.2
AT1G33920 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 6.1e-06 54.7 123 34.1
Haze_23996 Corylus avellana HOM05D000248 ORTHO05D000146 6.1e-06 54.7 123 36.6
Lj1C1144T7 Lonicera japonica HOM05D000248 ORTHO05D000146 6.1e-06 54.7 122 37.7
Lj2A352T44 Lonicera japonica HOM05D000248 ORTHO05D000146 6.1e-06 54.7 113 34.5
Ca_07525_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 7.9e-06 54.3 123 34.1
Ca_30589_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 7.9e-06 54.3 123 34.1
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.9e-06 54.3 113 34.5


User provided reference genes

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