Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g001480 Solanum pennellii HOM05D000205 ORTHO05D000438 2.3e-54 215.3 108 100.0
Solyc02g005180.3 Solanum lycopersicum HOM05D000205 ORTHO05D000438 2.8e-28 128.6 77 88.3
PGSC0003DMG400006636 Solanum tuberosum HOM05D000205 ORTHO05D000438 1.2e-26 123.2 77 85.7
Peaxi162Scf00185g00210 Petunia axillaris HOM05D000205 ORTHO05D000438 4.8e-12 74.7 59 64.4
Manes.09G162300 Manihot esculenta HOM05D000205 ORTHO05D000438 6.5e-09 64.3 63 54.0
Peaxi162Scf00434g00064 Petunia axillaris HOM05D000205 ORTHO05D000438 1.1e-08 63.5 61 52.5
Sabra05G0038800 Salix brachista HOM05D000205 ORTHO05D000438 1.1e-08 63.5 61 55.7
Dinv22913 Davidia involucrata HOM05D000205 ORTHO05D000438 1.5e-08 63.2 53 60.4
Nitab4.5_0001423g0030 Nicotiana tabacum HOM05D000205 ORTHO05D000438 1.5e-08 63.2 68 47.1
Eucgr.B02013 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.9e-08 62.8 55 58.2
Solyc01g098490.3 Solanum lycopersicum HOM05D000205 ORTHO05D000438 1.9e-08 62.8 68 48.5
Sopen01g042050 Solanum pennellii HOM05D000205 ORTHO05D000438 1.9e-08 62.8 70 45.7
PGSC0003DMG401028565 Solanum tuberosum HOM05D000205 ORTHO05D000438 1.9e-08 62.8 68 48.5
Potri.005G037000 Populus trichocarpa HOM05D000205 ORTHO05D000438 2.5e-08 62.4 73 52.1
Thecc.05G299300 Theobroma cacao HOM05D000205 ORTHO05D000438 2.5e-08 62.4 80 43.8
Sopen01g042060 Solanum pennellii HOM05D000205 ORTHO05D000438 3.2e-08 62.0 61 54.1
Solyc01g098500.3 Solanum lycopersicum HOM05D000205 ORTHO05D000438 4.2e-08 61.6 61 52.5
PGSC0003DMG402028565 Solanum tuberosum HOM05D000205 ORTHO05D000438 4.2e-08 61.6 51 60.8
Cc02_g32510 Coffea canephora HOM05D000205 ORTHO05D000438 5.5e-08 61.2 67 55.2
Manes.08G124200 Manihot esculenta HOM05D000205 ORTHO05D000438 5.5e-08 61.2 63 52.4
CAN.G134.239 Capsicum annuum HOM05D000205 ORTHO05D000438 7.2e-08 60.8 49 61.2
Duzib177G0103 Durio zibethinus HOM05D000205 ORTHO05D000438 7.2e-08 60.8 79 44.3
RhsimUnG0079900 Rhododendron simsii HOM05D000205 ORTHO05D000438 7.2e-08 60.8 62 51.6
GSVIVG01022034001 Vitis vinifera HOM05D000205 ORTHO05D000438 7.2e-08 60.8 55 58.2
Nitab4.5_0001903g0020 Nicotiana tabacum HOM05D000205 ORTHO05D000438 9.4e-08 60.5 61 49.2
Rhsim07G0178800 Rhododendron simsii HOM05D000205 ORTHO05D000438 9.4e-08 60.5 62 51.6
vmacro05042 Vaccinium macrocarpon HOM05D000205 ORTHO05D000438 9.4e-08 60.5 58 53.4
Aa31LG8G7270 Aethionema arabicum HOM05D000205 ORTHO05D000438 1.2e-07 60.1 61 49.2
Duzib128G1687 Durio zibethinus HOM05D000205 ORTHO05D000438 1.2e-07 60.1 57 54.4
Eucgr.L01459 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.2e-07 60.1 56 58.9
Thecc.05G299100 Theobroma cacao HOM05D000205 ORTHO05D000438 1.2e-07 60.1 57 52.6
Lj7A485G34 Lonicera japonica HOM05D000205 ORTHO05D000438 1.6e-07 59.7 72 47.2
QL08p050970 Quercus lobata HOM05D000015 ORTHO05D000249 1.6e-07 59.7 74 43.2
CiPaw.07G013100 Carya illinoinensis HOM05D000205 ORTHO05D000438 2.1e-07 59.3 61 50.8
COL.COLO4_13542 Corchorus olitorius HOM05D000205 ORTHO05D000438 2.1e-07 59.3 55 52.7
Dinv22909 Davidia involucrata HOM05D000205 ORTHO05D000438 2.1e-07 59.3 53 54.7
ECA246G2264 Erigeron canadensis HOM05D000205 ORTHO05D000438 2.1e-07 59.3 58 51.7
Gohir.A11G262200 Gossypium hirsutum HOM05D000205 ORTHO05D000438 2.1e-07 59.3 57 50.9
Potri.005G039900 Populus trichocarpa HOM05D000205 ORTHO05D000438 2.1e-07 59.3 53 58.5
TWI56G0605 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 2.1e-07 59.3 74 47.3
PGR083G1438 Punica granatum HOM05D000205 ORTHO05D000438 2.7e-07 58.9 70 50.0
vmacro05041 Vaccinium macrocarpon HOM05D000205 ORTHO05D000438 2.7e-07 58.9 55 56.4
CSS0037127 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 3.6e-07 58.5 66 50.0
Carub.0003s2040 Capsella rubella HOM05D000205 ORTHO05D000438 3.6e-07 58.5 57 50.9
Duzib177G1100 Durio zibethinus HOM05D000205 ORTHO05D000438 3.6e-07 58.5 60 48.3
Lsat_1_v5_gn_5_39240 Lactuca sativa HOM05D000205 ORTHO05D000438 3.6e-07 58.5 57 50.9
PGR083G1419 Punica granatum HOM05D000205 ORTHO05D000438 3.6e-07 58.5 55 54.5
Thecc.05G298700 Theobroma cacao HOM05D000205 ORTHO05D000438 3.6e-07 58.5 56 50.0
TWI56G0351 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 3.6e-07 58.5 72 44.4
TAR365G0820 Trochodendron aralioides HOM05D000205 ORTHO05D000438 3.6e-07 58.5 76 42.1
GSVIVG01022031001 Vitis vinifera HOM05D000205 ORTHO05D000438 3.6e-07 58.5 54 55.6
vmacro05040 Vaccinium macrocarpon HOM05D000205 ORTHO05D000438 4.7e-07 58.2 55 56.4
COL.COLO4_11360 Corchorus olitorius HOM05D000205 ORTHO05D000438 6.1e-07 57.8 55 50.9
Gohir.D11G272100 Gossypium hirsutum HOM05D000205 ORTHO05D000438 6.1e-07 57.8 53 54.7
Gorai.007G293100 Gossypium raimondii HOM05D000205 ORTHO05D000438 6.1e-07 57.8 53 54.7
Thecc.05G298800 Theobroma cacao HOM05D000205 ORTHO05D000438 6.1e-07 57.8 67 43.3
Eucgr.D01064 Eucalyptus grandis HOM05D000205 ORTHO05D000438 8.0e-07 57.4 87 40.2
Gohir.A11G262100 Gossypium hirsutum HOM05D000205 ORTHO05D000438 8.0e-07 57.4 53 52.8
TWI36G0428 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 8.0e-07 57.4 57 54.4
BcaC05g28335 Brassica carinata HOM05D000205 ORTHO05D000438 1.0e-06 57.0 57 47.4
A05p28420 Brassica napus HOM05D000205 ORTHO05D000438 1.0e-06 57.0 57 47.4
BraA05t21722Z Brassica rapa HOM05D000205 ORTHO05D000438 1.0e-06 57.0 57 47.4
CARHR096200 Cardamine hirsuta HOM05D000205 ORTHO05D000438 1.0e-06 57.0 57 50.9
Eucgr.H04438 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.0e-06 57.0 53 56.6
Hma1.2p1_0958F.1_g241450 Hydrangea macrophylla HOM05D000205 ORTHO05D000438 1.0e-06 57.0 76 43.4
CANSAT54G1961 Cannabis sativa HOM05D000205 ORTHO05D000438 1.4e-06 56.6 56 48.2
Dinv22917 Davidia involucrata HOM05D000205 ORTHO05D000438 1.4e-06 56.6 48 62.5
Dinv40242 Davidia involucrata HOM05D000205 ORTHO05D000438 1.4e-06 56.6 67 49.3
ECA246G2334 Erigeron canadensis HOM05D000205 ORTHO05D000438 1.4e-06 56.6 58 48.3
GSVIVG01022035001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.4e-06 56.6 55 52.7
AT3G20460 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 1.8e-06 56.2 57 49.1
Eucgr.B02014 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.8e-06 56.2 55 52.7
TWI56G1460 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 1.8e-06 56.2 52 59.6
C05p43870 Brassica napus HOM05D000205 ORTHO05D000438 2.3e-06 55.8 57 47.4
Migut.B01284 Erythranthe guttata HOM05D000205 ORTHO05D000438 2.3e-06 55.8 46 63.0
Eucgr.H04439 Eucalyptus grandis HOM05D000205 ORTHO05D000438 2.3e-06 55.8 56 55.4
Eucgr.H04441 Eucalyptus grandis HOM05D000205 ORTHO05D000438 2.3e-06 55.8 56 55.4
Thhalv10020647m.g Eutrema salsugineum HOM05D000205 ORTHO05D000438 2.3e-06 55.8 57 49.1
Nn3g21202 Nelumbo nucifera HOM05D000205 ORTHO05D000438 2.3e-06 55.8 53 56.6
Sabra13G0028300 Salix brachista HOM05D000205 ORTHO05D000438 2.3e-06 55.8 74 45.9
BcaNung02473 Brassica carinata HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
BcaNung04362 Brassica carinata HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
A06p37620 Brassica napus HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
C07p40610 Brassica napus HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
BolC7t44597H Brassica oleracea HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
BraA06t26682Z Brassica rapa HOM05D000205 ORTHO05D000438 3.0e-06 55.5 47 57.4
CSS0000054 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 3.0e-06 55.5 55 52.7
CSS0034914 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 3.0e-06 55.5 55 52.7
CAN.G134.240 Capsicum annuum HOM05D000205 ORTHO05D000438 3.0e-06 55.5 53 52.8
Ciclev10001032m.g Citrus clementina HOM05D000205 ORTHO05D000438 3.0e-06 55.5 55 49.1
Gohir.D11G272200 Gossypium hirsutum HOM05D000205 ORTHO05D000438 3.0e-06 55.5 58 48.3
MBI18_g40509_MAGBIO Magnolia biondii HOM05D000205 ORTHO05D000438 3.0e-06 55.5 54 50.0
GSVIVG01022022001 Vitis vinifera HOM05D000205 ORTHO05D000438 3.0e-06 55.5 82 39.0
FAN14G0109 Fragaria x ananassa HOM05D000205 ORTHO05D000438 4.0e-06 55.1 55 52.7
FAN14G4914 Fragaria x ananassa HOM05D000205 ORTHO05D000438 4.0e-06 55.1 55 52.7
Hma1.2p1_3523F.1_g336540 Hydrangea macrophylla HOM05D000205 ORTHO05D013496 4.0e-06 55.1 65 50.8
QL03p004128 Quercus lobata HOM05D000205 ORTHO05D000438 4.0e-06 55.1 55 49.1
QL03p074159 Quercus lobata HOM05D000205 ORTHO05D022564 4.0e-06 55.1 55 52.7
AL3G34180 Arabidopsis lyrata HOM05D000205 ORTHO05D000438 5.2e-06 54.7 57 47.4
BcaB07g34192 Brassica carinata HOM05D000205 ORTHO05D000438 5.2e-06 54.7 47 55.3
C02p57970 Brassica napus HOM05D000205 ORTHO05D000438 5.2e-06 54.7 47 55.3
BolC2t11865H Brassica oleracea HOM05D000205 ORTHO05D000438 5.2e-06 54.7 47 55.3
BolC5t33104H Brassica oleracea HOM05D000205 ORTHO05D000438 5.2e-06 54.7 57 45.6
Ciclev10003029m.g Citrus clementina HOM05D000205 ORTHO05D000438 5.2e-06 54.7 52 53.8
ECA248G3560 Erigeron canadensis HOM05D000205 ORTHO05D000438 5.2e-06 54.7 64 45.3
FAN05G2081 Fragaria x ananassa HOM05D000205 ORTHO05D000438 5.2e-06 54.7 55 52.7
Gohir.A10G104300 Gossypium hirsutum HOM05D000205 ORTHO05D000438 5.2e-06 54.7 54 48.1
Gohir.D10G164400 Gossypium hirsutum HOM05D000205 ORTHO05D000438 5.2e-06 54.7 54 48.1
Gorai.007G293200 Gossypium raimondii HOM05D000205 ORTHO05D000438 5.2e-06 54.7 62 43.5
HanXRQChr05g0158821 Helianthus annuus HOM05D000205 ORTHO05D000438 5.2e-06 54.7 55 50.9
Medtr7g113960 Medicago truncatula HOM05D000205 ORTHO05D000438 5.2e-06 54.7 74 43.2
QL03p003432 Quercus lobata HOM05D000205 ORTHO05D000438 5.2e-06 54.7 75 41.3
QL03p003720 Quercus lobata HOM05D000205 ORTHO05D000438 5.2e-06 54.7 75 41.3
QL09p001338 Quercus lobata HOM05D000205 ORTHO05D000438 5.2e-06 54.7 68 47.1
Atru.chr2.517 Acer truncatum HOM05D000205 ORTHO05D000438 6.7e-06 54.3 52 50.0
MSTRG.17024 Avicennia marina HOM05D000205 ORTHO05D000438 6.7e-06 54.3 46 60.9
BcaC05g28333 Brassica carinata HOM05D000205 ORTHO05D000438 6.7e-06 54.3 57 50.9
A02p38560 Brassica napus HOM05D000205 ORTHO05D000438 6.7e-06 54.3 47 55.3
C05p43880 Brassica napus HOM05D000205 ORTHO05D000438 6.7e-06 54.3 57 50.9
BraA02t08833Z Brassica rapa HOM05D000205 ORTHO05D000438 6.7e-06 54.3 47 55.3
COL.COLO4_13544 Corchorus olitorius HOM05D000205 ORTHO05D000438 6.7e-06 54.3 56 46.4
Oeu013214.1 Olea europaea HOM05D001043 ORTHO05D292550 6.7e-06 54.3 66 48.5
Rhsim07G0178700 Rhododendron simsii HOM05D000205 ORTHO05D000438 6.7e-06 54.3 56 51.8
Cpa.g.sc48.2 Carica papaya HOM05D000205 ORTHO05D000438 8.8e-06 53.9 55 50.9
ECA246G4999 Erigeron canadensis HOM05D000205 ORTHO05D000438 8.8e-06 53.9 49 55.1
Thhalv10004135m.g Eutrema salsugineum HOM05D000205 ORTHO05D000438 8.8e-06 53.9 47 53.2
FvH4_6g05060 Fragaria vesca HOM05D000205 ORTHO05D000438 8.8e-06 53.9 64 46.9
Hma1.2p1_0617F.1_g190080 Hydrangea macrophylla HOM05D000205 ORTHO05D000438 8.8e-06 53.9 77 41.6
TAR633G2210 Trochodendron aralioides HOM05D000205 ORTHO05D000438 8.8e-06 53.9 54 48.1


User provided reference genes

Program Settings