Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.0e-304 1049.3 528 100.0
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.7e-299 1030.8 528 98.7
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.1e-298 1029.2 526 98.1
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-266 922.5 536 86.0
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 7.0e-266 920.2 525 86.7
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.0e-264 916.4 533 85.7
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.9e-242 842.4 533 79.0
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 3.8e-235 818.1 519 78.0
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 7.1e-234 813.9 533 75.6
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 7.9e-233 810.4 532 76.7
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.8e-232 809.3 533 77.3
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 5.3e-229 797.7 515 77.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.0e-229 797.0 533 75.8
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 2.6e-228 795.4 527 75.3
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 5.8e-228 794.3 519 76.7
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.2e-225 786.6 521 74.1
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.5e-225 785.0 519 75.0
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 6.0e-225 784.3 535 74.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 7.9e-225 783.9 526 74.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.0e-224 783.5 525 74.9
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 8.7e-224 780.4 516 75.6
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.1e-223 780.0 530 73.8
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.3e-223 778.5 527 74.4
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 3.3e-223 778.5 512 75.8
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 5.6e-223 777.7 507 75.7
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 7.4e-223 777.3 519 75.3
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 7.4e-223 777.3 527 74.4
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 2.8e-222 775.4 530 73.2
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 3.7e-222 775.0 516 75.4
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 1.4e-221 773.1 530 73.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.4e-221 773.1 532 72.4
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.8e-221 772.7 480 79.0
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-221 772.3 532 72.4
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 3.1e-221 771.9 527 74.2
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 6.9e-221 770.8 519 73.6
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 6.9e-221 770.8 512 75.4
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.5e-220 769.6 533 73.7
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.0e-220 769.2 515 75.7
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.6e-220 768.8 512 75.4
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.4e-220 768.5 512 75.2
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 7.6e-220 767.3 526 73.8
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.3e-219 766.5 527 73.1
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 1.7e-219 766.1 524 73.3
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 2.9e-219 765.4 524 73.1
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.8e-219 765.0 517 74.9
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 8.4e-219 763.8 512 74.8
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.1e-218 763.5 523 73.6
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.5e-218 762.3 529 73.2
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.5e-218 762.3 530 71.7
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 4.2e-218 761.5 534 72.1
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 1.6e-217 759.6 533 72.6
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.1e-217 759.2 490 75.5
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.0e-216 756.9 526 72.2
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 2.3e-216 755.7 527 72.5
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.0e-216 755.4 526 72.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 3.0e-216 755.4 531 71.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 8.7e-216 753.8 524 72.5
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.1e-215 753.4 523 71.7
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.1e-215 753.4 530 72.8
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.5e-215 753.1 534 70.8
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 7.4e-215 750.7 490 74.9
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.6e-214 749.6 531 71.2
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.8e-214 748.0 530 71.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 6.3e-214 747.7 526 71.5
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 8.2e-214 747.3 530 70.9
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-212 743.0 527 71.5
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 2.0e-212 742.7 531 71.6
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.0e-212 742.7 613 64.1
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 3.8e-211 738.4 519 71.3
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 3.8e-211 738.4 524 70.0
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 5.0e-211 738.0 534 69.5
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 3.2e-210 735.3 487 74.9
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.2e-210 734.2 469 75.3
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-209 733.4 527 70.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-209 732.6 526 69.8
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 2.7e-209 732.3 521 70.2
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 6.1e-209 731.1 531 71.2
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.0e-208 730.3 495 75.2
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.8e-208 729.6 519 70.9
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 2.3e-208 729.2 517 70.6
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 8.8e-208 727.2 528 70.1
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 8.2e-206 720.7 526 68.6
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.1e-205 720.3 523 69.2
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 1.4e-205 719.9 487 73.1
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 3.1e-205 718.8 461 75.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.1e-205 718.8 531 70.1
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 4.1e-205 718.4 516 70.5
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 1.5e-204 716.5 506 70.9
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 2.0e-204 716.1 517 69.4
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 4.5e-204 714.9 483 73.5
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.7e-204 714.1 531 67.6
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 7.7e-204 714.1 517 70.0
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 3.8e-203 711.8 534 66.7
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 5.0e-203 711.4 516 69.8
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 8.5e-203 710.7 525 67.8
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 8.5e-203 710.7 534 68.7
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.1e-202 710.3 483 73.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.4e-202 709.9 531 67.8
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.9e-202 709.5 555 65.6
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.2e-202 708.8 533 67.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 6.1e-201 704.5 533 67.4
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.0e-200 703.7 516 69.2
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 5.1e-200 701.4 516 68.4
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 8.8e-200 700.7 516 68.8
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.0e-199 699.5 516 68.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 5.7e-199 698.0 513 69.2
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.7e-198 696.4 489 72.4
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.4e-197 692.6 527 66.8
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 5.3e-197 691.4 519 66.9
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 5.3e-197 691.4 519 66.9
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.0e-196 689.5 516 67.6
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.4e-196 688.7 517 68.5
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 2.0e-191 672.9 489 69.9
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.6e-191 672.5 516 68.0
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 4.4e-191 671.8 529 68.8
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-190 669.8 406 77.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.8e-189 666.4 540 65.0
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.7e-182 642.1 540 62.8
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.6e-180 636.7 479 67.6
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.5e-178 630.2 540 61.7
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.2e-177 627.1 402 74.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 2.7e-177 625.9 536 60.8
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.6e-164 583.6 498 60.6
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.7e-163 580.1 530 58.3
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 6.4e-158 561.6 529 57.1
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.6e-153 545.8 526 58.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.3e-152 543.1 503 57.9
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 8.9e-152 541.2 542 55.0
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.2e-148 530.8 408 67.6
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.9e-146 523.5 537 53.3
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 3.4e-143 512.7 347 75.5
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.7e-142 510.4 429 62.9
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.5e-138 496.5 354 70.9
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.1e-133 481.1 496 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.9e-130 470.3 561 48.1
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.8e-129 466.5 376 64.9
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.3e-126 457.6 547 47.5
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.4e-120 436.8 529 48.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.0e-119 433.7 389 61.7
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.9e-98 364.0 534 41.4
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.6e-97 360.9 306 55.6
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.2e-95 354.8 504 43.7
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 1.1e-85 321.6 296 61.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.0e-66 257.7 166 80.1
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 2.3e-59 234.2 311 46.3
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 7.5e-58 229.2 461 33.2
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 5.4e-56 223.0 234 55.6
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 5.7e-50 203.0 495 31.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 4.9e-49 199.9 400 33.8
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.4e-43 181.8 366 36.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.3e-43 181.0 91 89.0
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.6e-39 168.3 111 76.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 7.8e-39 166.0 138 62.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 5.0e-38 163.3 97 77.3
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.6e-36 157.1 169 49.1
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.7e-36 156.8 464 29.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.0e-35 153.7 118 64.4
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 2.9e-33 147.5 136 66.9
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 5.4e-32 143.3 125 69.6
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 4.7e-20 103.6 86 55.8
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.5e-18 98.6 168 39.3
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.8e-12 77.0 40 87.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 3.1e-11 74.3 48 70.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 7.6e-10 69.7 40 77.5
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.4e-08 64.7 98 39.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 2.7e-07 61.2 40 75.0
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 4.6e-07 60.5 33 81.8
Peaxi162Scf00232g00531 Petunia axillaris HOM05D005961 ORTHO05D007391 6.6e-06 56.6 219 22.8
PGR031G3438 Punica granatum HOM05D002999 ORTHO05D003137 8.7e-06 56.2 195 25.1


User provided reference genes

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