Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.0e-252 876.3 465 100.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.0e-244 848.2 469 96.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 5.7e-243 844.0 465 96.1
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.8e-201 706.1 463 79.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.5e-195 686.4 467 80.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.5e-195 684.1 465 79.1
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 6.6e-151 538.1 308 88.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.1e-118 431.0 507 52.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.4e-116 424.1 471 54.8
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.3e-114 417.5 481 52.6
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 3.2e-113 412.9 473 53.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.4e-111 407.5 470 53.4
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 8.8e-111 404.8 474 53.0
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.1e-110 404.4 472 51.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.7e-110 402.1 470 50.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.7e-110 402.1 467 52.2
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 9.7e-110 401.4 471 51.6
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 2.2e-109 400.2 469 50.3
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.8e-109 399.8 466 50.9
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.8e-109 399.8 480 51.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.4e-108 397.5 478 51.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.4e-108 397.5 478 51.7
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.8e-108 397.1 473 50.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.1e-108 396.0 479 49.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 2.0e-107 393.7 478 52.5
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.0e-107 393.7 471 50.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.5e-107 392.5 466 53.9
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.7e-107 391.7 479 50.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.9e-106 389.8 467 48.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.9e-106 389.8 475 49.5
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 8.5e-106 388.3 465 51.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.5e-106 388.3 478 49.0
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 8.5e-106 388.3 473 48.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-105 387.5 476 49.2
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.2e-105 386.3 477 49.7
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 9.4e-105 384.8 474 49.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.7e-104 383.3 488 47.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.7e-104 383.3 483 50.1
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 4.7e-104 382.5 497 46.3
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 6.1e-104 382.1 473 49.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 7.9e-104 381.7 472 49.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.8e-103 380.6 472 48.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-103 380.6 479 49.1
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.7e-103 378.6 463 51.8
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 8.8e-103 378.3 461 49.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.1e-102 377.9 485 47.6
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.5e-102 377.5 485 47.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.4e-102 375.9 476 47.7
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.4e-102 375.2 467 47.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 9.7e-102 374.8 481 48.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.2e-101 373.6 472 49.2
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.8e-101 373.2 472 49.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.7e-101 372.9 477 48.0
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.3e-101 372.1 472 48.9
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 8.2e-101 371.7 480 47.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-100 371.3 470 46.6
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.1e-100 371.3 473 48.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.4e-100 370.2 462 50.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.1e-100 369.4 470 49.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.0e-99 367.1 460 48.3
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.5e-99 365.9 479 48.2
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 5.0e-98 362.5 474 47.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 6.5e-98 362.1 474 47.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.5e-97 359.0 462 48.1
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 9.4e-97 358.2 482 47.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.6e-96 357.5 468 48.7
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 8.0e-96 355.1 462 47.8
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 8.0e-96 355.1 491 45.4
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.0e-95 354.8 468 44.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.4e-95 354.4 468 47.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.8e-95 354.0 467 45.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 8.8e-95 351.7 475 46.1
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.6e-94 350.1 474 46.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-94 349.4 468 44.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 4.4e-94 349.4 461 47.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 9.7e-94 348.2 462 47.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.3e-93 347.8 607 39.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.4e-92 344.4 466 45.9
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-92 344.0 477 44.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.4e-92 343.6 460 46.7
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 5.3e-92 342.4 461 46.6
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.2e-91 341.3 467 45.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.2e-91 341.3 531 42.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 2.0e-91 340.5 466 45.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.7e-91 340.1 466 46.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 4.5e-91 339.3 480 46.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.9e-91 339.0 479 45.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.9e-91 339.0 466 45.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.8e-90 336.3 470 45.5
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.0e-90 335.9 462 45.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.0e-90 335.9 466 44.4
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 6.5e-90 335.5 486 46.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.9e-89 334.0 488 41.6
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.2e-89 332.8 472 44.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 4.2e-89 332.8 462 45.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.2e-88 331.3 522 41.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.2e-88 331.3 467 44.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.6e-88 330.9 470 44.9
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.6e-88 330.9 406 47.5
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 3.6e-88 329.7 475 44.6
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.1e-88 328.9 462 44.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.0e-87 328.2 349 52.4
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.0e-87 328.2 411 47.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.4e-87 327.8 469 44.6
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 4.0e-87 326.2 491 42.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 6.8e-87 325.5 471 44.2
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-86 324.7 372 48.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-86 324.3 470 44.5
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.5e-86 324.3 471 45.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.4e-86 323.2 475 44.6
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.7e-86 322.4 464 43.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 9.8e-86 321.6 477 44.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 8.3e-85 318.5 463 45.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-84 318.2 372 47.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.0e-84 315.5 432 47.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.1e-84 315.1 468 44.2
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.2e-83 314.7 471 44.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-82 311.2 479 43.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.7e-82 310.8 282 58.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.2e-82 310.5 460 41.5
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.8e-82 309.7 468 42.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.5e-81 307.0 493 42.0
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 5.2e-79 299.3 478 41.6
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.5e-78 295.4 469 40.3
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.8e-76 290.8 313 51.1
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.1e-76 289.7 400 43.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.4e-76 289.3 466 41.4
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.6e-75 287.7 433 43.0
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.4e-71 274.6 460 39.6
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 3.0e-71 273.5 367 42.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 3.0e-71 273.5 438 40.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 9.2e-68 261.9 373 44.8
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.7e-67 260.4 425 42.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-67 260.4 363 45.2
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 3.5e-67 260.0 378 43.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.6e-67 259.6 375 44.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 6.2e-64 249.2 373 42.9
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 8.9e-63 245.4 372 41.1
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.2e-61 240.7 453 38.6
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.2e-60 236.9 311 45.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.1e-60 236.5 212 60.4
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 5.4e-60 236.1 480 36.9
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-59 235.0 308 41.6
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.6e-59 234.6 239 53.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-59 234.2 308 41.6
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.1e-55 221.9 446 35.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 4.4e-54 216.5 401 38.9
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.2e-53 214.2 472 35.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.3e-53 212.2 465 36.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.4e-52 211.5 310 40.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.9e-52 211.1 382 39.5
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.5e-49 200.7 145 70.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-48 198.0 295 37.6
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.6e-48 196.8 360 35.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 8.4e-45 185.7 397 33.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 4.1e-44 183.3 344 39.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 5.4e-44 183.0 267 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.7e-43 180.6 323 36.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-43 180.6 195 51.3
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 8.6e-42 175.6 266 45.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 4.7e-40 169.9 207 47.3
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.9e-37 159.8 308 34.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.0e-35 152.9 366 35.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.1e-31 140.6 103 71.8
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 7.6e-30 136.0 141 50.4
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.2e-28 130.6 229 41.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 7.9e-27 125.9 208 39.9
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.1e-26 123.2 97 61.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.3e-24 118.6 198 40.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.6e-22 110.9 77 70.1
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.4e-21 105.9 198 33.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.8e-16 90.9 191 34.6
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.1e-15 89.0 74 60.8
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.4e-15 88.6 51 78.4
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.4e-15 87.8 82 59.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.2e-14 85.5 66 60.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 7.6e-14 82.8 57 70.2
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.3e-08 65.5 126 34.1
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 1.2e-06 58.9 34 79.4


User provided reference genes

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