Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 3.3e-91 338.2 153 100.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 9.6e-91 336.7 153 99.3
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 2.4e-89 332.0 153 96.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.2e-77 293.1 153 87.6
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.8e-74 281.2 146 87.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 9.1e-73 276.9 159 82.4
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 9.4e-70 266.9 153 78.4
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.6e-69 266.2 152 80.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 8.8e-68 260.4 151 78.1
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-66 256.1 153 77.8
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.8e-66 254.6 155 76.1
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 8.2e-66 253.8 154 76.6
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.8e-65 252.7 153 76.5
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.6e-64 249.6 152 77.0
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.5e-64 248.4 156 71.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.5e-64 248.1 159 70.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.3e-63 246.5 151 74.8
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.3e-63 246.5 156 70.5
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.9e-63 245.4 153 73.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.5e-63 243.8 154 72.1
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.5e-62 242.3 153 71.2
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 9.4e-62 240.4 150 73.3
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 2.1e-61 239.2 150 74.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.7e-61 238.8 153 70.6
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 3.6e-61 238.4 153 69.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.0e-60 236.9 153 69.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.4e-60 236.5 171 64.3
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.0e-60 235.3 153 68.0
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.0e-60 235.3 153 68.6
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 3.0e-60 235.3 153 69.9
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.7e-60 234.2 153 68.6
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.1e-59 233.4 159 68.6
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 1.5e-59 233.0 153 68.0
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 2.0e-59 232.6 153 67.3
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 2.6e-59 232.3 161 65.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-59 232.3 153 66.7
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 3.3e-59 231.9 153 67.3
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.7e-59 231.1 159 66.0
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 7.5e-59 230.7 153 66.7
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 9.7e-59 230.3 153 68.0
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.3e-58 229.9 152 65.1
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.7e-58 229.6 122 78.7
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.7e-58 228.4 153 67.3
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.8e-58 228.0 153 66.7
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 6.3e-58 227.6 153 66.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 8.2e-58 227.3 149 68.5
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 8.2e-58 227.3 153 66.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 8.2e-58 227.3 156 68.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.1e-57 226.9 123 80.5
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.1e-57 226.9 153 68.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.1e-57 226.9 153 66.0
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.4e-57 226.5 153 64.1
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 3.1e-57 225.3 132 75.8
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 7.0e-57 224.2 164 63.4
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 7.0e-57 224.2 153 66.0
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 9.1e-57 223.8 153 65.4
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-56 223.4 153 66.7
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-56 223.4 154 68.2
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.2e-56 223.4 154 68.2
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.2e-56 223.4 153 66.7
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-56 223.4 153 66.0
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-56 223.0 154 67.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 1.6e-56 223.0 153 64.1
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 2.0e-56 222.6 123 78.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 3.5e-56 221.9 123 78.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.5e-56 221.9 153 66.7
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.5e-56 221.9 153 66.7
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.5e-56 221.9 149 65.8
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.5e-56 221.9 153 64.7
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 3.5e-56 221.9 122 76.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 4.5e-56 221.5 123 78.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 4.5e-56 221.5 152 65.1
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 5.9e-56 221.1 153 63.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 5.9e-56 221.1 123 78.0
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 7.7e-56 220.7 123 78.0
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.0e-55 220.3 153 64.1
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 1.0e-55 220.3 123 77.2
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.3e-55 219.9 123 78.0
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.3e-55 219.9 159 64.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-55 219.9 153 66.0
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.3e-55 219.9 153 66.0
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.3e-55 219.9 153 66.0
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.9e-55 218.8 123 77.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.0e-55 218.0 149 63.8
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 5.0e-55 218.0 122 76.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.5e-55 217.6 148 68.9
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 6.5e-55 217.6 153 62.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.5e-54 216.5 123 77.2
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.9e-54 216.1 120 75.8
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 3.2e-54 215.3 154 66.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.2e-54 214.9 137 72.3
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 7.2e-54 214.2 153 63.4
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.0e-52 210.3 151 64.2
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.3e-52 209.1 156 63.5
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.0e-52 208.8 151 62.9
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 6.8e-52 207.6 128 71.1
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.8e-52 207.6 118 75.4
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.5e-51 206.5 151 62.3
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.0e-51 206.1 150 62.0
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.6e-51 205.7 151 62.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.4e-51 205.3 150 62.7
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 5.7e-51 204.5 118 75.4
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.3e-50 203.4 129 70.5
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 2.8e-50 202.2 126 69.0
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.8e-50 202.2 156 61.5
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.8e-50 202.2 156 61.5
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.3e-50 201.1 130 70.8
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.2e-48 196.8 112 76.8
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.5e-47 191.0 127 69.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.3e-42 176.8 179 50.8
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 8.3e-42 174.1 177 49.7
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 9.2e-41 170.6 127 63.8
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 3.5e-40 168.7 157 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 5.6e-38 161.4 133 51.9
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.2e-37 160.2 148 50.0
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.0e-36 157.1 132 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.7e-31 139.8 144 46.5
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.0e-31 139.0 127 56.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.5e-30 136.7 87 69.0
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 8.9e-28 127.5 72 76.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.5e-24 115.5 59 83.1
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.0e-23 114.0 57 82.5
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 5.6e-22 108.2 81 67.9
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.7e-21 105.1 84 58.3
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.1e-20 102.4 83 57.8
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-18 96.3 83 55.4
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 6.4e-18 94.7 97 49.5
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 8.3e-18 94.4 77 63.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.1e-17 94.0 56 66.1
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.9e-17 93.2 105 46.7
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 2.1e-13 79.7 60 70.0
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.8e-12 76.6 120 37.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 5.2e-12 75.1 79 46.8
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 6.8e-12 74.7 111 36.0
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.5e-11 73.6 64 51.6
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.4e-11 72.4 62 53.2
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.4e-11 72.0 59 57.6
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.4e-11 72.0 59 57.6
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.3e-10 70.5 102 37.3
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.9e-10 69.3 62 51.6
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 2.4e-09 66.2 55 61.8
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.6e-06 55.1 47 48.9


User provided reference genes

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