Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g098480.1 Solanum lycopersicum HOM05D000796 ORTHO05D035910 5.0e-25 117.1 64 100.0
CAN.G1155.31 Capsicum annuum HOM05D000796 ORTHO05D000674 4.0e-14 80.9 59 79.7
FAN05G3784 Fragaria x ananassa HOM05D000796 ORTHO05D000674 4.0e-14 80.9 63 73.0
Dinv38174 Davidia involucrata HOM05D000796 ORTHO05D000674 6.8e-14 80.1 61 73.8
HanXRQChr14g0435711 Helianthus annuus HOM05D000796 ORTHO05D000674 8.9e-14 79.7 59 78.0
FvH4_4g13320 Fragaria vesca HOM05D000796 ORTHO05D000674 1.2e-13 79.3 59 76.3
FAN07G2747 Fragaria x ananassa HOM05D000796 ORTHO05D000674 1.2e-13 79.3 59 76.3
FAN12G4004 Fragaria x ananassa HOM05D000796 ORTHO05D000674 1.2e-13 79.3 59 76.3
FAN17G2744 Fragaria x ananassa HOM05D000796 ORTHO05D000674 1.2e-13 79.3 59 76.3
FAN22G0451 Fragaria x ananassa HOM05D000796 ORTHO05D000674 1.2e-13 79.3 59 76.3
ECA238G4095 Erigeron canadensis HOM05D000796 ORTHO05D000674 1.5e-13 79.0 61 73.8
Glyma.18G002200 Glycine max HOM05D000796 ORTHO05D000674 1.5e-13 79.0 62 69.4
Lsat_1_v5_gn_2_47461 Lactuca sativa HOM05D000796 ORTHO05D000674 1.5e-13 79.0 59 76.3
vmacro00438 Vaccinium macrocarpon HOM05D000796 ORTHO05D000674 1.5e-13 79.0 59 76.3
CSS0038473 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 2.0e-13 78.6 59 74.6
Actinidia21259 Actinidia chinensis HOM05D000796 ORTHO05D000674 2.6e-13 78.2 59 76.3
TAR636G1439 Trochodendron aralioides HOM05D000796 ORTHO05D000674 2.6e-13 78.2 59 76.3
Dinv27200 Davidia involucrata HOM05D000796 ORTHO05D000674 3.4e-13 77.8 59 74.6
Oeu034320.1 Olea europaea HOM05D000796 ORTHO05D000674 3.4e-13 77.8 59 72.9
Oeu056427.1 Olea europaea HOM05D000796 ORTHO05D000674 3.4e-13 77.8 61 70.5
Prupe.1G164800 Prunus persica HOM05D000796 ORTHO05D000674 3.4e-13 77.8 59 74.6
Lj6A382T17 Lonicera japonica HOM05D000796 ORTHO05D000674 4.4e-13 77.4 61 73.8
CANSAT78G0533 Cannabis sativa HOM05D000796 ORTHO05D000674 5.8e-13 77.0 59 71.2
Rhsim09G0060100 Rhododendron simsii HOM05D000796 ORTHO05D000674 5.8e-13 77.0 59 74.6
RcHm_v2.0_Chr4g0413621 Rosa chinensis HOM05D000796 ORTHO05D000674 5.8e-13 77.0 59 72.9
PGSC0003DMG400004659 Solanum tuberosum HOM05D000796 ORTHO05D000674 5.8e-13 77.0 42 97.6
Glyma.11G254900 Glycine max HOM05D000796 ORTHO05D000674 9.8e-13 76.3 58 70.7
Cpa.g.sc157.50 Carica papaya HOM05D000796 ORTHO05D000674 1.7e-12 75.5 55 72.7
CDE02G4118 Ceratophyllum demersum HOM05D000796 ORTHO05D000674 1.7e-12 75.5 59 69.5
Sc13g0000410 Simmondsia chinensis HOM05D000796 ORTHO05D000674 1.7e-12 75.5 59 69.5
Cc00_g31940 Coffea canephora HOM05D000796 ORTHO05D000674 2.2e-12 75.1 60 68.3
COL.COLO4_20226 Corchorus olitorius HOM05D000796 ORTHO05D000674 2.2e-12 75.1 55 72.7
Medtr3g084090 Medicago truncatula HOM05D000796 ORTHO05D000674 2.2e-12 75.1 59 69.5
Psat5g100240 Pisum sativum HOM05D000796 ORTHO05D000674 2.2e-12 75.1 59 69.5
TPR.G13219 Trifolium pratense HOM05D000796 ORTHO05D000674 2.2e-12 75.1 59 69.5
MD05G1230600 Malus domestica HOM05D000796 ORTHO05D000674 2.9e-12 74.7 59 71.2
Actinidia35842 Actinidia chinensis HOM05D000796 ORTHO05D000674 3.7e-12 74.3 59 71.2
CsaV3_2G011740 Cucumis sativus L. HOM05D000796 ORTHO05D000674 3.7e-12 74.3 59 69.5
Gohir.A02G019300 Gossypium hirsutum HOM05D000796 ORTHO05D000674 3.7e-12 74.3 55 70.9
Gohir.D02G022600 Gossypium hirsutum HOM05D000796 ORTHO05D000674 3.7e-12 74.3 55 70.9
Gorai.005G028000 Gossypium raimondii HOM05D000796 ORTHO05D000674 3.7e-12 74.3 55 70.9
VMungo1383G2956 Vigna mungo HOM05D000796 ORTHO05D000674 3.7e-12 74.3 55 72.7
AUR62020860 Chenopodium quinoa HOM05D000796 ORTHO05D000674 4.9e-12 73.9 55 69.1
Lalb_Chr08g0230441 Lupinus albus HOM05D000796 ORTHO05D000674 4.9e-12 73.9 55 70.9
QL06p025978 Quercus lobata HOM05D000796 ORTHO05D000674 4.9e-12 73.9 59 69.5
Sed0014910 Sechium edule HOM05D000796 ORTHO05D000674 4.9e-12 73.9 59 69.5
Thecc.04G195300 Theobroma cacao HOM05D000796 ORTHO05D000674 4.9e-12 73.9 55 70.9
Cfa014997 Carpinus fangiana HOM05D000796 ORTHO05D000674 6.4e-12 73.6 59 67.8
Ca_16402_v3 Cicer arietinum L. HOM05D000796 ORTHO05D000674 6.4e-12 73.6 61 67.2
Haze_11651 Corylus avellana HOM05D000796 ORTHO05D000674 6.4e-12 73.6 59 67.8
MELO3C020428.2 Cucumis melo HOM05D000796 ORTHO05D000674 6.4e-12 73.6 59 67.8
Duzib268G0321 Durio zibethinus HOM05D000796 ORTHO05D000674 6.4e-12 73.6 57 66.7
TWI73G1011 Tripterygium wilfordii HOM05D000796 ORTHO05D000674 6.4e-12 73.6 55 67.3
CiPaw.01G117100 Carya illinoinensis HOM05D000796 ORTHO05D000674 8.3e-12 73.2 59 67.8
CDE02G1729 Ceratophyllum demersum HOM05D000796 ORTHO05D000674 8.3e-12 73.2 57 71.9
Gohir.D10G138400 Gossypium hirsutum HOM05D000796 ORTHO05D000674 8.3e-12 73.2 55 69.1
Gorai.011G153500 Gossypium raimondii HOM05D000796 ORTHO05D000674 8.3e-12 73.2 55 69.1
Phvul.001G267000 Phaseolus vulgaris HOM05D000796 ORTHO05D000674 8.3e-12 73.2 54 72.2
Duzib212G0769 Durio zibethinus HOM05D000796 ORTHO05D000674 1.1e-11 72.8 55 70.9
Gohir.A10G127600 Gossypium hirsutum HOM05D000796 ORTHO05D000674 1.4e-11 72.4 55 69.1
Lj6g0014221 Lotus japonicus HOM05D000796 ORTHO05D000674 1.4e-11 72.4 59 67.8
Potri.001G320000 Populus trichocarpa HOM05D000796 ORTHO05D000674 1.4e-11 72.4 59 67.8
Duzib151G0865 Durio zibethinus HOM05D000796 ORTHO05D000674 1.9e-11 72.0 55 69.1
PGR083G2194 Punica granatum HOM05D000796 ORTHO05D000674 1.9e-11 72.0 60 71.7
arahy.Tifrunner.gnm1.ann1.EB8TWM Arachis hypogaea HOM05D000796 ORTHO05D000674 2.4e-11 71.6 59 69.5
arahy.Tifrunner.gnm1.ann1.ISNY9U Arachis hypogaea HOM05D000796 ORTHO05D000674 2.4e-11 71.6 59 69.5
CiPaw.02G064600 Carya illinoinensis HOM05D000796 ORTHO05D000674 2.4e-11 71.6 60 63.3
Nn1g08189 Nelumbo nucifera HOM05D000796 ORTHO05D035910 2.4e-11 71.6 54 77.8
TAR362G0457 Trochodendron aralioides HOM05D000796 ORTHO05D000674 2.4e-11 71.6 56 73.2
DCAR_026652 Daucus carota HOM05D000796 ORTHO05D000674 3.2e-11 71.2 53 66.0
unitig_37.g12035 Utricularia gibba HOM05D000796 ORTHO05D000674 3.2e-11 71.2 59 64.4
EL10Ac3g07456 Beta vulgaris HOM05D000796 ORTHO05D000674 4.1e-11 70.9 51 70.6
Manes.03G144400 Manihot esculenta HOM05D000796 ORTHO05D000674 4.1e-11 70.9 59 66.1
Potri.017G059100 Populus trichocarpa HOM05D000796 ORTHO05D000674 4.1e-11 70.9 59 66.1
Eucgr.H02683 Eucalyptus grandis HOM05D000796 ORTHO05D000674 7.0e-11 70.1 55 67.3
Sabra17G0052700 Salix brachista HOM05D000796 ORTHO05D000674 7.0e-11 70.1 57 70.2
Cfa009354 Carpinus fangiana HOM05D000796 ORTHO05D000674 9.2e-11 69.7 59 66.1
Manes.15G056600 Manihot esculenta HOM05D000796 ORTHO05D000674 9.2e-11 69.7 59 64.4
HanXRQChr02g0058491 Helianthus annuus HOM05D000796 ORTHO05D000674 1.6e-10 68.9 59 66.1
MSTRG.4245 Avicennia marina HOM05D000796 ORTHO05D000674 2.0e-10 68.6 57 64.9
DCAR_024535 Daucus carota HOM05D000796 ORTHO05D000674 2.0e-10 68.6 53 66.0
Sabra16G0202700 Salix brachista HOM05D000796 ORTHO05D000674 2.7e-10 68.2 59 59.3
Atru.chr4.1580 Acer truncatum HOM05D000796 ORTHO05D000674 4.6e-10 67.4 59 64.4
Ciclev10004881m.g Citrus clementina HOM05D000796 ORTHO05D000674 4.6e-10 67.4 59 61.0
Migut.G00759 Erythranthe guttata HOM05D000796 ORTHO05D000674 7.8e-10 66.6 43 83.7
Peaxi162Scf00652g00014 Petunia axillaris HOM05D000796 ORTHO05D000674 1.0e-09 66.2 42 85.7
Hund19008 Selenicereus undatus HOM05D000796 ORTHO05D000674 1.7e-09 65.5 47 72.3
Aa31LG8G10430 Aethionema arabicum HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
AL3G38810 Arabidopsis lyrata HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
AT3G23820 Arabidopsis thaliana HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
Carub.0003s2413 Capsella rubella HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
CARHR099820 Cardamine hirsuta HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
Sp3g21540 Schrenkiella parvula HOM05D000796 ORTHO05D000674 2.3e-09 65.1 53 62.3
Thhalv10002521m.g Eutrema salsugineum HOM05D000796 ORTHO05D000674 3.0e-09 64.7 53 62.3
THA.LOC104808695 Tarenaya hassleriana HOM05D000796 ORTHO05D000674 3.0e-09 64.7 53 62.3
unitig_92.g28202 Utricularia gibba HOM05D000796 ORTHO05D000674 3.0e-09 64.7 53 64.2
Sopen09g035230 Solanum pennellii HOM05D000796 ORTHO05D000674 5.0e-09 63.9 42 81.0
Solyc09g092330.3 Solanum lycopersicum HOM05D000796 ORTHO05D000674 8.6e-09 63.2 42 85.7
HPP92_009943 Vanilla planifolia HOM05D000796 ORTHO05D000674 8.6e-09 63.2 53 66.0
arahy.Tifrunner.gnm1.ann1.K1R19W Arachis hypogaea HOM05D000796 ORTHO05D000674 1.1e-08 62.8 53 64.2
BcaB04g20418 Brassica carinata HOM05D000796 ORTHO05D000674 1.5e-08 62.4 49 65.3
A01p31210 Brassica napus HOM05D000796 ORTHO05D000674 1.9e-08 62.0 49 65.3
BolC1t03930H Brassica oleracea HOM05D000796 ORTHO05D000674 1.9e-08 62.0 49 65.3
BraA01t03246Z Brassica rapa HOM05D000796 ORTHO05D000674 1.9e-08 62.0 49 65.3
Nitab4.5_0004850g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 1.9e-08 62.0 42 83.3
PGSC0003DMG400020589 Solanum tuberosum HOM05D000796 ORTHO05D000674 1.9e-08 62.0 42 83.3
BcaB06g26546 Brassica carinata HOM05D000796 ORTHO05D000674 2.5e-08 61.6 49 61.2
BcaC06g35578 Brassica carinata HOM05D000796 ORTHO05D000674 2.5e-08 61.6 49 61.2
A07p08540 Brassica napus HOM05D000796 ORTHO05D000674 2.5e-08 61.6 49 61.2
C07p13320 Brassica napus HOM05D000796 ORTHO05D000674 2.5e-08 61.6 49 61.2
BolC7t41826H Brassica oleracea HOM05D000796 ORTHO05D000674 2.5e-08 61.6 49 61.2
CSS0012851 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 2.5e-08 61.6 44 70.5
CSS0016774 Camellia sinensis var. sinensis HOM05D000796 ORTHO05D000674 2.5e-08 61.6 44 70.5
Nitab4.5_0000697g0180 Nicotiana tabacum HOM05D000796 ORTHO05D000674 2.5e-08 61.6 42 81.0
Hund24412 Selenicereus undatus HOM05D000796 ORTHO05D000674 2.5e-08 61.6 59 59.3
C01p39760 Brassica napus HOM05D000796 ORTHO05D000674 4.3e-08 60.8 49 63.3
BraA07t28638Z Brassica rapa HOM05D000796 ORTHO05D000674 4.3e-08 60.8 48 62.5
Nitab4.5_0000676g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 4.3e-08 60.8 36 86.1
BcaC01g03362 Brassica carinata HOM05D000796 ORTHO05D000674 5.6e-08 60.5 46 67.4
A03p43390 Brassica napus HOM05D000796 ORTHO05D000674 5.6e-08 60.5 46 67.4
BolC3t17593H Brassica oleracea HOM05D000796 ORTHO05D000674 5.6e-08 60.5 46 67.4
BraA03t13477Z Brassica rapa HOM05D000796 ORTHO05D000674 5.6e-08 60.5 46 67.4
Peaxi162Scf00047g10011 Petunia axillaris HOM05D000796 ORTHO05D000674 5.6e-08 60.5 36 86.1
C03p53320 Brassica napus HOM05D000796 ORTHO05D000674 1.2e-07 59.3 46 67.4
SalBow8G0192 Salvia bowleyana HOM05D000796 ORTHO05D000674 1.2e-07 59.3 36 86.1
Nitab4.5_0007705g0010 Nicotiana tabacum HOM05D000796 ORTHO05D000674 1.6e-07 58.9 35 85.7
BcaB03g14611 Brassica carinata HOM05D000796 ORTHO05D000674 2.1e-07 58.5 46 65.2
PSO017G4744 Papaver somniferum HOM05D000796 ORTHO05D000674 4.7e-07 57.4 36 80.6
PSO063G4923 Papaver somniferum HOM05D000796 ORTHO05D000674 4.7e-07 57.4 36 80.6
PGSC0003DMG400015746 Solanum tuberosum HOM05D000796 ORTHO05D000674 4.7e-07 57.4 57 59.6
CAN.G767.13 Capsicum annuum HOM05D000796 ORTHO05D000674 1.1e-06 56.2 31 93.5
Lsat_1_v5_gn_6_59160 Lactuca sativa HOM05D000796 ORTHO05D000674 1.1e-06 56.2 42 71.4
ATR0561G031 Amborella trichopoda HOM05D000796 ORTHO05D000674 3.1e-06 54.7 43 62.8
AUR62018558 Chenopodium quinoa HOM05D000796 ORTHO05D000674 3.1e-06 54.7 38 71.1


User provided reference genes

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