Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g094390.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 1.1e-125 453.4 243 100.0
Sopen12g031280 Solanum pennellii HOM05D003173 ORTHO05D003546 1.3e-118 429.9 249 94.0
PGSC0003DMG400029419 Solanum tuberosum HOM05D003173 ORTHO05D003546 1.3e-110 403.3 248 89.9
CAN.G401.21 Capsicum annuum HOM05D003173 ORTHO05D003546 3.9e-94 348.6 253 78.3
Nitab4.5_0000498g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 2.1e-76 289.7 249 64.3
Nitab4.5_0002353g0090 Nicotiana tabacum HOM05D003173 ORTHO05D003546 1.2e-74 283.9 248 62.1
Peaxi162Scf00064g00081 Petunia axillaris HOM05D003173 ORTHO05D003546 9.7e-61 237.7 250 60.4
Peaxi162Scf00744g00026 Petunia axillaris HOM05D003173 ORTHO05D003546 5.2e-46 188.7 251 49.4
Peaxi162Scf00174g00083 Petunia axillaris HOM05D003173 ORTHO05D003546 7.4e-45 184.9 253 48.6
Solyc04g081960.1 Solanum lycopersicum HOM05D003173 ORTHO05D003546 6.3e-44 181.8 258 47.7
PGSC0003DMG400009955 Solanum tuberosum HOM05D003173 ORTHO05D003546 4.1e-43 179.1 266 49.2
Sopen04g035610 Solanum pennellii HOM05D003173 ORTHO05D003546 3.5e-42 176.0 262 46.9
Cc10_g01130 Coffea canephora HOM05D003173 ORTHO05D003546 4.5e-34 149.1 267 45.3
CSS0006148 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 7.7e-34 148.3 254 42.5
Duzib116G0616 Durio zibethinus HOM05D003173 ORTHO05D003546 1.3e-33 147.5 256 42.2
Duzib093G0730 Durio zibethinus HOM05D003173 ORTHO05D003546 1.7e-33 147.1 254 42.5
Aqoxy6G01958 Aquilegia oxysepala HOM05D003173 ORTHO05D003546 2.9e-33 146.4 252 45.6
Manes.18G009300 Manihot esculenta HOM05D003173 ORTHO05D003546 2.9e-33 146.4 260 41.2
Thecc.08G051800 Theobroma cacao HOM05D003173 ORTHO05D003546 5.0e-33 145.6 251 42.2
TAR376G0945 Trochodendron aralioides HOM05D003173 ORTHO05D003546 5.0e-33 145.6 253 40.7
Haze_22703 Corylus avellana HOM05D003173 ORTHO05D003546 6.5e-33 145.2 266 42.5
PGR031G0086 Punica granatum HOM05D003173 ORTHO05D003546 2.5e-32 143.3 277 39.7
Actinidia15462 Actinidia chinensis HOM05D003173 ORTHO05D003546 3.2e-32 142.9 249 42.2
TAR628G1607 Trochodendron aralioides HOM05D003173 ORTHO05D003546 1.2e-31 141.0 254 39.0
Dinv31893 Davidia involucrata HOM05D003173 ORTHO05D003546 2.7e-31 139.8 247 42.9
CSS0021479 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 3.6e-31 139.4 251 43.4
Nitab4.5_0003030g0080 Nicotiana tabacum HOM05D003173 ORTHO05D003546 3.6e-31 139.4 194 51.5
Oeu026120.1 Olea europaea HOM05D003173 ORTHO05D003546 3.6e-31 139.4 248 41.9
CSS0028811 Camellia sinensis var. sinensis HOM05D003173 ORTHO05D003546 4.7e-31 139.0 251 43.4
CiPaw.07G143600 Carya illinoinensis HOM05D003173 ORTHO05D003546 2.3e-30 136.7 268 40.3
COL.COLO4_26083 Corchorus olitorius HOM05D003173 ORTHO05D003546 2.3e-30 136.7 255 42.0
Rhsim06G0012200 Rhododendron simsii HOM05D003173 ORTHO05D003546 2.3e-30 136.7 257 38.5
Glyma.14G222400 Glycine max HOM05D003173 ORTHO05D003546 4.0e-30 136.0 245 40.8
Cfa014008 Carpinus fangiana HOM05D003173 ORTHO05D003546 5.2e-30 135.6 261 42.1
Nn6g31907 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.5e-29 134.0 258 39.9
VMungo0647G1822 Vigna mungo HOM05D003173 ORTHO05D003546 1.5e-29 134.0 257 41.2
MSTRG.24229 Avicennia marina HOM05D003173 ORTHO05D003546 2.0e-29 133.7 259 37.5
Migut.N03186 Erythranthe guttata HOM05D003173 ORTHO05D003546 2.0e-29 133.7 252 39.7
vmacro04379 Vaccinium macrocarpon HOM05D003173 ORTHO05D003546 5.7e-29 132.1 259 40.2
TAR381G1677 Trochodendron aralioides HOM05D003173 ORTHO05D003546 9.8e-29 131.3 256 41.4
Phvul.001G002200 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 1.7e-28 130.6 258 40.7
Ca_13485_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 2.2e-28 130.2 258 38.8
Lalb_Chr19g0131611 Lupinus albus HOM05D003173 ORTHO05D003546 4.8e-28 129.0 286 38.1
arahy.Tifrunner.gnm1.ann1.WLLD0D Arachis hypogaea HOM05D003173 ORTHO05D003546 6.3e-28 128.6 266 40.2
CiPaw.08G069200 Carya illinoinensis HOM05D003173 ORTHO05D003546 6.3e-28 128.6 269 41.6
Sabra02G0013200 Salix brachista HOM05D003173 ORTHO05D003546 8.3e-28 128.3 252 40.1
FAN20G0850 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.1e-27 127.9 273 37.7
Manes.05G142500 Manihot esculenta HOM05D003173 ORTHO05D003546 1.1e-27 127.9 257 39.3
Gorai.009G191200 Gossypium raimondii HOM05D003173 ORTHO05D003546 1.4e-27 127.5 260 38.8
FvH4_2g37950 Fragaria vesca HOM05D003173 ORTHO05D003546 1.8e-27 127.1 274 37.2
Gohir.D05G185800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.8e-27 127.1 260 41.9
Potri.002G016500 Populus trichocarpa HOM05D003173 ORTHO05D003546 2.4e-27 126.7 260 39.6
FAN15G3480 Fragaria x ananassa HOM05D003173 ORTHO05D003546 5.4e-27 125.6 273 37.4
QL02p012938 Quercus lobata HOM05D003173 ORTHO05D003546 5.4e-27 125.6 267 37.1
SalBow7G1496 Salvia bowleyana HOM05D003173 ORTHO05D003546 5.4e-27 125.6 247 41.7
CANSAT25G2829 Cannabis sativa HOM05D003173 ORTHO05D003546 7.0e-27 125.2 280 36.4
Gohir.A05G182800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 9.1e-27 124.8 260 38.5
FAN27G2702 Fragaria x ananassa HOM05D003173 ORTHO05D003546 1.2e-26 124.4 272 37.9
EL10Ac1g02082 Beta vulgaris HOM05D003173 ORTHO05D003546 3.5e-26 122.9 296 37.8
Phvul.009G019900 Phaseolus vulgaris HOM05D003173 ORTHO05D003546 3.5e-26 122.9 277 37.5
Migut.C00894 Erythranthe guttata HOM05D003173 ORTHO05D003546 4.5e-26 122.5 247 40.9
Ciclev10002153m.g Citrus clementina HOM05D003173 ORTHO05D003546 1.0e-25 121.3 273 37.7
Atru.chr13.216 Acer truncatum HOM05D003173 ORTHO05D003546 1.7e-25 120.6 289 38.1
MBI09_g01020_MAGBIO Magnolia biondii HOM05D003173 ORTHO05D003546 1.7e-25 120.6 249 41.8
Oeu051144.1 Olea europaea HOM05D003173 ORTHO05D003546 2.3e-25 120.2 259 37.1
Sc15g0004670 Simmondsia chinensis HOM05D003173 ORTHO05D003546 2.9e-25 119.8 241 37.8
Cpa.g.sc26.264 Carica papaya HOM05D003173 ORTHO05D003546 3.8e-25 119.4 254 37.8
Lalb_Chr23g0265991 Lupinus albus HOM05D003173 ORTHO05D003546 2.5e-24 116.7 250 38.8
TWI56G0288 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 2.5e-24 116.7 250 38.0
VMungo1309G1265 Vigna mungo HOM05D003173 ORTHO05D003546 3.3e-24 116.3 270 37.4
Hma1.2p1_0023F.1_g015790 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 4.2e-24 115.9 247 38.5
ECA233G2815 Erigeron canadensis HOM05D003173 ORTHO05D003546 7.2e-24 115.2 283 33.6
Sabra05G0189700 Salix brachista HOM05D003173 ORTHO05D003546 7.2e-24 115.2 259 37.1
Potri.005G245600 Populus trichocarpa HOM05D003173 ORTHO05D003546 9.5e-24 114.8 267 36.3
Psat5g012200 Pisum sativum HOM05D003173 ORTHO05D003546 1.2e-23 114.4 252 39.7
TWI12G1263 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.2e-23 114.4 246 38.6
Lsat_1_v5_gn_8_29221 Lactuca sativa HOM05D003173 ORTHO05D003546 1.6e-23 114.0 300 34.3
Prupe.1G359400 Prunus persica HOM05D003173 ORTHO05D003546 2.8e-23 113.2 260 36.5
Glyma.04G020700 Glycine max HOM05D003173 ORTHO05D003546 4.7e-23 112.5 271 36.2
Psat6g001080 Pisum sativum HOM05D003173 ORTHO05D003546 4.7e-23 112.5 251 37.8
Glyma.06G020800 Glycine max HOM05D003173 ORTHO05D003546 6.1e-23 112.1 270 35.9
Gohir.D05G257500 Gossypium hirsutum HOM05D003173 ORTHO05D003546 1.4e-22 110.9 271 35.8
TPR.G38194 Trifolium pratense HOM05D003173 ORTHO05D003546 1.4e-22 110.9 248 38.3
Medtr3g114750 Medicago truncatula HOM05D003173 ORTHO05D003546 1.8e-22 110.5 260 38.1
Gohir.A05G255800 Gossypium hirsutum HOM05D003173 ORTHO05D003546 3.0e-22 109.8 272 35.3
Medtr1g026110 Medicago truncatula HOM05D003173 ORTHO05D003546 3.0e-22 109.8 249 36.9
Glyma.17G261300 Glycine max HOM05D003173 ORTHO05D003546 4.0e-22 109.4 241 38.6
RcHm_v2.0_Chr6g0303671 Rosa chinensis HOM05D003173 ORTHO05D003546 4.0e-22 109.4 269 38.7
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 5.2e-22 109.0 291 34.4
Gorai.009G268900 Gossypium raimondii HOM05D003173 ORTHO05D003546 6.8e-22 108.6 254 37.0
MELO3C003727.2 Cucumis melo HOM05D003173 ORTHO05D003546 8.9e-22 108.2 248 35.5
ClCG05G015410 Citrullus lanatus HOM05D003173 ORTHO05D003546 1.2e-21 107.8 244 36.5
Dinv39556 Davidia involucrata HOM05D003173 ORTHO05D003546 1.5e-21 107.5 226 38.9
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 4.4e-21 105.9 249 36.1
Lalb_Chr08g0246301 Lupinus albus HOM05D003173 ORTHO05D003546 7.5e-21 105.1 176 39.2
HanXRQChr14g0428491 Helianthus annuus HOM05D003173 ORTHO05D003546 1.7e-20 104.0 273 33.3
Nn5g30846 Nelumbo nucifera HOM05D003173 ORTHO05D003546 1.7e-20 104.0 258 36.0
arahy.Tifrunner.gnm1.ann1.YK013F Arachis hypogaea HOM05D003173 ORTHO05D003546 2.2e-20 103.6 285 34.0
Lalb_Chr03g0033561 Lupinus albus HOM05D003173 ORTHO05D003546 2.2e-20 103.6 261 38.7
SGA_v2.0_scaffold19G08585 Striga asiatica HOM05D003173 ORTHO05D003546 2.2e-20 103.6 248 33.9
Eucgr.J02492 Eucalyptus grandis HOM05D003173 ORTHO05D003546 8.3e-20 101.7 255 36.1
Lsat_1_v5_gn_2_6961 Lactuca sativa HOM05D003173 ORTHO05D003546 8.3e-20 101.7 294 32.0
arahy.Tifrunner.gnm1.ann1.S3QWAM Arachis hypogaea HOM05D003173 ORTHO05D003546 1.1e-19 101.3 278 33.1
PSO541G5041 Papaver somniferum HOM05D003173 ORTHO05D003546 4.1e-19 99.4 252 34.1
TPR.G26427 Trifolium pratense HOM05D003173 ORTHO05D003546 5.4e-19 99.0 264 35.6
Lj5g0013533 Lotus japonicus HOM05D003173 ORTHO05D003546 7.0e-19 98.6 261 35.2
BolC6t40040H Brassica oleracea HOM05D003173 ORTHO05D003546 2.7e-18 96.7 256 35.2
BraA07t31692Z Brassica rapa HOM05D003173 ORTHO05D003546 3.5e-18 96.3 256 31.6
AL2G36110 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 4.5e-18 95.9 279 35.5
Carub.0002s2296 Capsella rubella HOM05D003173 ORTHO05D003546 5.9e-18 95.5 265 32.1
CARHR069610 Cardamine hirsuta HOM05D003173 ORTHO05D003546 7.8e-18 95.1 253 35.6
Oeu057579.1 Olea europaea HOM05D003173 ORTHO05D003546 7.8e-18 95.1 256 35.2
AT1G76070 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 1.0e-17 94.7 272 35.7
BcaC08g47100 Brassica carinata HOM05D003173 ORTHO05D003546 1.7e-17 94.0 261 33.7
BraA02t07073Z Brassica rapa HOM05D003173 ORTHO05D003546 2.9e-17 93.2 260 36.5
Oeu039861.1 Olea europaea HOM05D003173 ORTHO05D003546 2.9e-17 93.2 253 36.0
A07p41630 Brassica napus HOM05D003173 ORTHO05D003546 5.0e-17 92.4 265 35.5
BraA06t24743Z Brassica rapa HOM05D003173 ORTHO05D003546 5.0e-17 92.4 263 31.9
Sp1g18040 Schrenkiella parvula HOM05D003173 ORTHO05D003546 6.6e-17 92.0 259 32.0
Sp5g31190 Schrenkiella parvula HOM05D003173 ORTHO05D003546 8.6e-17 91.7 272 37.1
THA.LOC104811444 Tarenaya hassleriana HOM05D003173 ORTHO05D003546 4.3e-16 89.4 265 31.7
ECA238G0569 Erigeron canadensis HOM05D000315 ORTHO05D000527 5.6e-16 89.0 277 29.2
A02p20410 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-15 87.8 262 34.7
A07p15840 Brassica napus HOM05D003173 ORTHO05D003546 1.2e-15 87.8 270 32.2
BraA07t29310Z Brassica rapa HOM05D003173 ORTHO05D003546 1.6e-15 87.4 267 31.1
DCAR_025088 Daucus carota HOM05D003173 ORTHO05D003546 2.1e-15 87.0 273 31.9
BcaC08g47302 Brassica carinata HOM05D003173 ORTHO05D003546 2.8e-15 86.7 261 34.5
C02p33480 Brassica napus HOM05D003173 ORTHO05D003546 2.8e-15 86.7 262 34.7
Carub.0001s1981 Capsella rubella HOM05D003173 ORTHO05D003546 2.8e-15 86.7 262 31.7
PSO675G7160 Papaver somniferum HOM05D003173 ORTHO05D003546 2.8e-15 86.7 260 31.9
ATR0661G366 Amborella trichopoda HOM05D003173 ORTHO05D003546 8.0e-15 85.1 247 29.6
BolC2t09356H Brassica oleracea HOM05D003173 ORTHO05D003546 1.0e-14 84.7 262 34.7
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 1.0e-14 84.7 213 31.9
BcaB07g32036 Brassica carinata HOM05D003173 ORTHO05D003546 1.8e-14 84.0 268 32.5
A06p16390 Brassica napus HOM05D003173 ORTHO05D003546 1.8e-14 84.0 263 30.8
BcaC03g15643 Brassica carinata HOM05D003173 ORTHO05D003546 2.3e-14 83.6 262 34.4
Ca_15466_v3 Cicer arietinum L. HOM05D003173 ORTHO05D003546 3.1e-14 83.2 115 47.0
A07p15740 Brassica napus HOM05D003173 ORTHO05D003546 4.0e-14 82.8 233 31.3
Thhalv10018992m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 5.2e-14 82.4 276 34.4
BcaB03g14324 Brassica carinata HOM05D003173 ORTHO05D003546 6.8e-14 82.0 260 28.8
Duzib264G0532 Durio zibethinus HOM05D003173 ORTHO05D003546 8.9e-14 81.6 241 33.2
DCAR_009512 Daucus carota HOM05D003173 ORTHO05D003546 1.2e-13 81.3 264 30.7
PGR102G2057 Punica granatum HOM05D003173 ORTHO05D003546 1.5e-13 80.9 262 31.3
Hma1.2p1_1598F.1_g292960 Hydrangea macrophylla HOM05D003173 ORTHO05D003546 2.0e-13 80.5 204 38.2
Actinidia37954 Actinidia chinensis HOM05D003173 ORTHO05D003546 2.6e-13 80.1 209 35.9
SHI08021 Sapria himalayana HOM05D003173 ORTHO05D003546 2.6e-13 80.1 219 33.3
Sed0006911 Sechium edule HOM05D003173 ORTHO05D003546 2.6e-13 80.1 234 32.9
GSVIVG01008738001 Vitis vinifera HOM05D003173 ORTHO05D003546 2.6e-13 80.1 174 37.9
HPP92_002481 Vanilla planifolia HOM05D003173 ORTHO05D003546 3.4e-13 79.7 211 31.8
CDE05G3154 Ceratophyllum demersum HOM05D001535 ORTHO05D003710 4.4e-13 79.3 253 30.8
BolC7t42850H Brassica oleracea HOM05D003173 ORTHO05D003546 7.5e-13 78.6 264 30.7
CsaV3_3G046130 Cucumis sativus L. HOM05D003173 ORTHO05D003546 1.3e-12 77.8 178 34.8
Lalb_Chr01g0008491 Lupinus albus HOM05D003173 ORTHO05D003546 1.3e-12 77.8 234 31.6
SHI05037 Sapria himalayana HOM05D003173 ORTHO05D003546 1.3e-12 77.8 219 33.3
Aa31LG4G6190 Aethionema arabicum HOM05D003173 ORTHO05D003546 2.2e-12 77.0 283 33.2
BcaC05g25935 Brassica carinata HOM05D003173 ORTHO05D003546 2.2e-12 77.0 262 30.9
BcaNung03372 Brassica carinata HOM05D003173 ORTHO05D003546 2.2e-12 77.0 264 30.7
C05p18890 Brassica napus HOM05D003173 ORTHO05D003546 2.2e-12 77.0 262 30.9
C07p23130 Brassica napus HOM05D003173 ORTHO05D003546 2.2e-12 77.0 264 30.7
Thhalv10009337m.g Eutrema salsugineum HOM05D003173 ORTHO05D003546 2.9e-12 76.6 260 31.2
BolC5t30588H Brassica oleracea HOM05D003173 ORTHO05D003546 3.7e-12 76.3 262 30.9
SHI13075 Sapria himalayana HOM05D003173 ORTHO05D003546 4.9e-12 75.9 219 32.9
AL1G33140 Arabidopsis lyrata HOM05D003173 ORTHO05D003546 1.4e-11 74.3 232 27.6
AT1G20310 Arabidopsis thaliana HOM05D003173 ORTHO05D003546 3.2e-11 73.2 263 28.9
BcaB05g24968 Brassica carinata HOM05D003173 ORTHO05D003546 5.4e-11 72.4 250 32.4
unitig_748.g7605 Utricularia gibba HOM05D003173 ORTHO05D003546 5.4e-11 72.4 217 29.0
Ah.00g000650 Amaranthus hybridus HOM05D003173 ORTHO05D003546 2.7e-10 70.1 102 52.9
Thecc.01G011100 Theobroma cacao HOM05D003173 ORTHO05D003546 2.7e-10 70.1 244 29.1
CARHR020790 Cardamine hirsuta HOM05D003173 ORTHO05D003546 3.0e-09 66.6 257 28.4
COL.COLO4_22498 Corchorus olitorius HOM05D003173 ORTHO05D003546 1.5e-08 64.3 183 32.8
Os09g0542900 Oryza sativa ssp. japonica HOM05D003173 ORTHO05D003546 1.9e-08 63.9 254 26.4
BcaC08g47295 Brassica carinata HOM05D003173 ORTHO05D003546 2.5e-08 63.5 129 31.0
HanXRQChr12g0366681 Helianthus annuus HOM05D003173 ORTHO05D003546 4.3e-08 62.8 200 30.0
CDE05G2702 Ceratophyllum demersum HOM05D003173 ORTHO05D003546 1.1e-06 58.2 214 28.5
TWI73G0798 Tripterygium wilfordii HOM05D003173 ORTHO05D003546 1.8e-06 57.4 252 28.2
Aa31LG7G4670 Aethionema arabicum HOM05D003173 ORTHO05D003546 3.1e-06 56.6 203 29.1
HanXRQChr12g0366691 Helianthus annuus HOM05D003173 ORTHO05D003546 6.8e-06 55.5 253 25.7
Zm00001eb103980 Zea mays HOM05D003173 ORTHO05D003546 6.8e-06 55.5 85 37.6


User provided reference genes

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