Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.8e-82 307.8 153 100.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.3e-66 256.5 131 96.9
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.7e-66 256.1 131 96.2
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 7.7e-64 247.3 130 93.8
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 7.7e-64 247.3 130 93.8
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 7.2e-62 240.7 136 87.5
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 3.3e-59 231.9 130 87.7
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.4e-59 231.5 130 86.9
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 9.7e-59 230.3 130 87.7
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 4.2e-54 214.9 136 75.7
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 9.4e-54 213.8 130 79.2
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.2e-53 213.4 136 75.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.2e-53 213.4 133 75.9
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.6e-53 213.0 130 78.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.7e-53 211.5 124 79.8
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.7e-53 211.5 125 80.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 4.7e-53 211.5 127 78.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 6.1e-53 211.1 130 77.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 8.0e-53 210.7 126 78.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.0e-52 210.3 130 76.9
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.4e-52 209.9 132 75.0
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.0e-52 208.4 124 79.0
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 4.0e-52 208.4 125 79.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 7.5e-51 204.1 137 70.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 7.5e-51 204.1 130 74.6
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 9.8e-51 203.8 130 76.2
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.8e-51 203.8 122 78.7
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 9.8e-51 203.8 140 69.3
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 1.3e-50 203.4 122 79.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-50 203.4 120 78.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-50 203.4 120 78.3
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.3e-50 203.4 125 76.0
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 2.2e-50 202.6 126 78.6
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.2e-50 202.6 123 78.0
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.2e-50 202.6 123 78.0
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 2.2e-50 202.6 120 77.5
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 3.7e-50 201.8 124 75.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 3.7e-50 201.8 120 77.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.7e-50 201.8 118 78.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.3e-50 200.7 129 75.2
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 8.3e-50 200.7 129 75.2
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.1e-49 200.3 120 76.7
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.1e-49 200.3 120 76.7
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.1e-49 200.3 124 74.2
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.1e-49 200.3 129 76.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.4e-49 199.9 122 77.0
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.4e-49 199.9 129 75.2
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 1.4e-49 199.9 133 72.2
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.8e-49 199.5 129 73.6
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.1e-49 198.7 131 73.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.1e-49 198.7 124 73.4
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.1e-49 198.7 120 77.5
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 4.1e-49 198.4 129 76.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 4.1e-49 198.4 129 75.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-49 198.0 120 77.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.4e-49 198.0 120 75.0
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.0e-49 197.6 129 74.4
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-48 196.8 120 76.7
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.6e-48 196.4 130 71.5
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.7e-48 195.7 114 78.1
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-48 195.7 126 72.2
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 3.5e-48 195.3 114 78.1
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 4.5e-48 194.9 173 60.1
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 5.9e-48 194.5 130 70.8
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 7.7e-48 194.1 120 75.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.0e-47 193.7 126 70.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.3e-47 193.4 135 67.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.3e-47 193.4 123 73.2
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-47 193.0 126 71.4
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.7e-47 193.0 120 74.2
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.7e-47 193.0 124 71.8
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.2e-47 192.6 130 72.3
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-47 192.6 126 71.4
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-47 192.6 120 74.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-47 192.6 120 74.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.9e-47 192.2 122 71.3
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.9e-47 192.2 124 71.8
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 5.0e-47 191.4 124 72.6
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 5.0e-47 191.4 120 73.3
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 6.5e-47 191.0 124 71.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 8.5e-47 190.7 124 70.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.1e-46 190.3 120 73.3
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.1e-46 190.3 133 67.7
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.9e-46 189.5 120 74.2
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.5e-46 189.1 124 71.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 7.2e-46 187.6 124 69.4
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.2e-46 187.6 120 73.3
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 7.2e-46 187.6 120 73.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-45 186.8 120 71.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.6e-45 186.4 123 72.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.4e-44 183.3 126 69.0
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.4e-44 183.3 125 68.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.3e-44 182.6 123 70.7
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 3.0e-44 182.2 126 69.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.0e-44 182.2 138 61.6
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 3.0e-44 182.2 125 70.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 4.0e-44 181.8 126 69.0
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 4.0e-44 181.8 126 69.0
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 6.8e-44 181.0 126 69.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 8.8e-44 180.6 124 71.8
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.2e-43 180.3 126 69.0
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.2e-43 180.3 126 69.0
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.2e-43 180.3 126 69.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.2e-43 180.3 125 66.4
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 2.6e-43 179.1 126 68.3
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 2.6e-43 179.1 126 68.3
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 2.6e-43 179.1 126 68.3
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 5.7e-43 177.9 109 73.4
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 6.3e-42 174.5 127 67.7
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.4e-41 172.6 130 66.9
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 4.1e-41 171.8 129 65.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.2e-40 170.2 103 76.7
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.0e-39 167.2 96 78.1
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.0e-39 167.2 127 64.6
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.5e-38 163.3 86 97.7
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.4e-33 144.8 82 81.7
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 2.0e-32 142.9 112 61.6
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.5e-32 142.1 82 79.3
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.3e-31 140.2 85 76.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 2.2e-26 122.9 80 75.0
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.4e-25 118.2 102 54.9
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.5e-24 115.5 88 60.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.3e-23 112.8 89 59.6
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-21 107.1 61 82.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.6e-21 105.5 129 50.4
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.2e-20 101.7 57 84.2
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 3.7e-18 95.5 76 59.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.4e-17 93.6 69 65.2
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-16 90.5 69 63.8
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 5.6e-14 81.6 99 42.4
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.2e-13 80.5 60 78.3
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 4.0e-12 75.5 113 44.2
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 1.5e-11 73.6 60 71.7
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.6e-11 72.8 60 71.7
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.6e-11 72.8 60 73.3
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 4.4e-11 72.0 48 68.8
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.2e-08 63.9 40 67.5
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 7.8e-08 61.2 53 49.1
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.7e-07 60.1 46 67.4


User provided reference genes

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