Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038750.2 Solanum lycopersicum HOM05D060526 ORTHO05D033862 2.0e-112 409.1 205 100.0
Sopen12g031630 Solanum pennellii HOM05D001957 ORTHO05D002015 1.9e-33 146.7 101 74.3
Solyc12g094740.3 Solanum lycopersicum HOM05D060526 ORTHO05D033862 2.7e-32 142.9 100 75.0
CAN.G1330.17 Capsicum annuum HOM05D001957 ORTHO05D002015 5.4e-20 102.1 110 52.7
Lj4C813T10 Lonicera japonica HOM05D001957 ORTHO05D002015 9.1e-20 101.3 112 50.0
Solyc04g082820.4 Solanum lycopersicum HOM05D001957 ORTHO05D002015 4.5e-19 99.0 110 51.8
Sopen04g036460 Solanum pennellii HOM05D001957 ORTHO05D002015 4.5e-19 99.0 110 51.8
Dinv05491 Davidia involucrata HOM05D001957 ORTHO05D002015 1.7e-18 97.1 111 47.7
Dinv23327 Davidia involucrata HOM05D001957 ORTHO05D002015 2.3e-18 96.7 111 46.8
PGSC0003DMG400010001 Solanum tuberosum HOM05D001957 ORTHO05D002015 1.5e-17 94.0 125 47.2
SalBow7G1766 Salvia bowleyana HOM05D001957 ORTHO05D002015 1.9e-17 93.6 110 47.3
Peaxi162Scf00385g00416 Petunia axillaris HOM05D001957 ORTHO05D002015 7.2e-17 91.7 107 49.5
CSS0045992 Camellia sinensis var. sinensis HOM05D001957 ORTHO05D002015 1.6e-16 90.5 111 42.3
CSS0043449 Camellia sinensis var. sinensis HOM05D001957 ORTHO05D002015 4.7e-16 89.0 111 44.1
Peaxi162Scf00064g00141 Petunia axillaris HOM05D001957 ORTHO05D002015 6.1e-16 88.6 111 46.8
Cc10_g00200 Coffea canephora HOM05D001957 ORTHO05D002015 8.0e-16 88.2 111 44.1
CANSAT25G0858 Cannabis sativa HOM05D001957 ORTHO05D002015 1.4e-15 87.4 109 47.7
Rhsim07G0258000 Rhododendron simsii HOM05D001957 ORTHO05D002015 1.4e-15 87.4 111 43.2
Actinidia37904 Actinidia chinensis HOM05D001957 ORTHO05D002015 1.8e-15 87.0 111 42.3
MSTRG.24521 Avicennia marina HOM05D001957 ORTHO05D002015 4.0e-15 85.9 109 45.9
Cfa014145 Carpinus fangiana HOM05D001957 ORTHO05D002015 6.8e-15 85.1 110 43.6
Nitab4.5_0000464g0040 Nicotiana tabacum HOM05D001957 ORTHO05D002015 1.2e-14 84.3 110 47.3
Actinidia17084 Actinidia chinensis HOM05D001957 ORTHO05D002015 1.5e-14 84.0 111 41.4
Migut.N02992 Erythranthe guttata HOM05D001957 ORTHO05D002015 1.5e-14 84.0 111 42.3
QL02p015933 Quercus lobata HOM05D001957 ORTHO05D002015 2.0e-14 83.6 110 46.4
CiPaw.07G132400 Carya illinoinensis HOM05D001957 ORTHO05D002015 9.8e-14 81.3 110 41.8
Prupe.5G004500 Prunus persica HOM05D001957 ORTHO05D002015 9.8e-14 81.3 103 44.7
Hma1.2p1_0810F.1_g222010 Hydrangea macrophylla HOM05D001957 ORTHO05D002015 1.7e-13 80.5 110 42.7
Haze_22870 Corylus avellana HOM05D001957 ORTHO05D002015 2.8e-13 79.7 87 48.3
Manes.05G129200 Manihot esculenta HOM05D001957 ORTHO05D002015 3.7e-13 79.3 109 45.0
Glyma.04G014100 Glycine max HOM05D001957 ORTHO05D002015 8.3e-13 78.2 89 47.2
Migut.C00350 Erythranthe guttata HOM05D001957 ORTHO05D002015 1.1e-12 77.8 110 42.7
Lj1g0013891 Lotus japonicus HOM05D001957 ORTHO05D002015 2.4e-12 76.6 89 47.2
Glyma.06G013900 Glycine max HOM05D001957 ORTHO05D002015 4.1e-12 75.9 102 44.1
MD06G1002900 Malus domestica HOM05D001957 ORTHO05D002015 7.0e-12 75.1 103 41.7
Oeu030365.2 Olea europaea HOM05D001957 ORTHO05D002015 7.0e-12 75.1 85 48.2
ClCG10G000090 Citrullus lanatus HOM05D001957 ORTHO05D002015 2.7e-11 73.2 112 40.2
Prupe.8G182600 Prunus persica HOM05D001957 ORTHO05D002015 4.5e-11 72.4 108 36.1
vmacro04429 Vaccinium macrocarpon HOM05D001957 ORTHO05D002015 4.5e-11 72.4 86 50.0
MELO3C013704.2 Cucumis melo HOM05D001957 ORTHO05D002015 5.9e-11 72.0 112 39.3
CsaV3_3G000100 Cucumis sativus L. HOM05D001957 ORTHO05D002015 5.9e-11 72.0 112 39.3
CsaV3_UNG149160 Cucumis sativus L. HOM05D001957 ORTHO05D002015 5.9e-11 72.0 112 39.3
DCAR_017616 Daucus carota HOM05D001957 ORTHO05D002015 5.9e-11 72.0 130 37.7
PGR119G0941 Punica granatum HOM05D001957 ORTHO05D002015 5.9e-11 72.0 107 37.4
unitig_744.g24080 Utricularia gibba HOM05D001957 ORTHO05D002015 5.9e-11 72.0 117 41.0
Eucgr.I02198 Eucalyptus grandis HOM05D001957 ORTHO05D002015 7.8e-11 71.6 95 43.2
arahy.Tifrunner.gnm1.ann1.ICIJ2U Arachis hypogaea HOM05D001957 ORTHO05D002015 1.7e-10 70.5 91 47.3
Actinidia33599 Actinidia chinensis HOM05D001957 ORTHO05D002015 2.3e-10 70.1 86 46.5
MSTRG.22077 Avicennia marina HOM05D001957 ORTHO05D002015 2.3e-10 70.1 111 39.6
RcHm_v2.0_Chr7g0216981 Rosa chinensis HOM05D001957 ORTHO05D002015 2.3e-10 70.1 111 36.9
arahy.Tifrunner.gnm1.ann1.FGBY5B Arachis hypogaea HOM05D001957 ORTHO05D002015 2.9e-10 69.7 114 39.5
QL06p053362 Quercus lobata HOM05D001957 ORTHO05D002015 2.9e-10 69.7 110 39.1
Ca_15380_v3 Cicer arietinum L. HOM05D001957 ORTHO05D002015 3.8e-10 69.3 89 44.9
FvH4_5g29710 Fragaria vesca HOM05D001957 ORTHO05D002015 5.0e-10 68.9 65 53.8
FAN08G2777 Fragaria x ananassa HOM05D001957 ORTHO05D002015 5.0e-10 68.9 65 53.8
FAN13G0926 Fragaria x ananassa HOM05D001957 ORTHO05D002015 5.0e-10 68.9 65 53.8
MD02G1107900 Malus domestica HOM05D001957 ORTHO05D002015 5.0e-10 68.9 95 38.9
TAR376G1057 Trochodendron aralioides HOM05D001957 ORTHO05D002015 5.0e-10 68.9 107 37.4
Manes.03G096500 Manihot esculenta HOM05D001957 ORTHO05D002015 6.6e-10 68.6 88 40.9
Psat5g008600 Pisum sativum HOM05D001957 ORTHO05D002015 6.6e-10 68.6 89 44.9
Sopen01g012870 Solanum pennellii HOM05D000004 ORTHO05D000002 6.6e-10 68.6 41 78.0
Phvul.009G008800 Phaseolus vulgaris HOM05D001957 ORTHO05D002015 8.6e-10 68.2 89 43.8
VMungo1309G0331 Vigna mungo HOM05D001957 ORTHO05D002015 8.6e-10 68.2 89 43.8
Dinv14189 Davidia involucrata HOM05D001957 ORTHO05D002015 1.1e-09 67.8 93 38.7
Manes.01G157900 Manihot esculenta HOM05D001957 ORTHO05D002015 1.1e-09 67.8 112 37.5
Ciclev10025351m.g Citrus clementina HOM05D001957 ORTHO05D002015 1.5e-09 67.4 112 35.7
GSVIVG01013439001 Vitis vinifera HOM05D001957 ORTHO05D002015 1.5e-09 67.4 115 39.1
Atru.chr13.41 Acer truncatum HOM05D001957 ORTHO05D002015 1.9e-09 67.0 111 36.0
CiPaw.08G182800 Carya illinoinensis HOM05D001957 ORTHO05D002015 1.9e-09 67.0 110 37.3
HanXRQChr08g0216791 Helianthus annuus HOM05D001957 ORTHO05D002015 1.9e-09 67.0 112 36.6
TAR628G1369 Trochodendron aralioides HOM05D001957 ORTHO05D002015 1.9e-09 67.0 107 36.4
CANSAT25G1116 Cannabis sativa HOM05D001957 ORTHO05D002015 2.5e-09 66.6 112 37.5
MBI04_g40276_MAGBIO Magnolia biondii HOM05D001957 ORTHO05D002015 2.5e-09 66.6 90 41.1
MD15G1227400 Malus domestica HOM05D001957 ORTHO05D002015 3.3e-09 66.2 95 38.9
Medtr3g116200 Medicago truncatula HOM05D001957 ORTHO05D002015 3.3e-09 66.2 89 43.8
Nn5g31062 Nelumbo nucifera HOM05D001957 ORTHO05D002015 3.3e-09 66.2 104 38.5
GSVIVG01026435001 Vitis vinifera HOM05D001957 ORTHO05D002015 3.3e-09 66.2 110 36.4
Lj5C170G8 Lonicera japonica HOM05D001957 ORTHO05D002015 4.3e-09 65.9 93 39.8
Prupe.7G187900 Prunus persica HOM05D001957 ORTHO05D002015 4.3e-09 65.9 93 38.7
RcHm_v2.0_Chr2g0096711 Rosa chinensis HOM05D001957 ORTHO05D002015 4.3e-09 65.9 94 43.6
VMungo1080G0861 Vigna mungo HOM05D001957 ORTHO05D002015 4.3e-09 65.9 89 42.7
Actinidia17983 Actinidia chinensis HOM05D001957 ORTHO05D002015 5.6e-09 65.5 91 39.6
Cpa.g.sc70.21 Carica papaya HOM05D001957 ORTHO05D002015 5.6e-09 65.5 110 38.2
Manes.02G117200 Manihot esculenta HOM05D001957 ORTHO05D002015 5.6e-09 65.5 95 38.9
PGSC0003DMG400047019 Solanum tuberosum HOM05D001957 ORTHO05D002015 5.6e-09 65.5 105 41.9
Cfa007116 Carpinus fangiana HOM05D001957 ORTHO05D002015 7.3e-09 65.1 110 39.1
HanXRQChr13g0415871 Helianthus annuus HOM05D001957 ORTHO05D002015 7.3e-09 65.1 112 35.7
TWI73G0267 Tripterygium wilfordii HOM05D001957 ORTHO05D002015 1.2e-08 64.3 115 34.8
CSS0045983 Camellia sinensis var. sinensis HOM05D001957 ORTHO05D002015 1.6e-08 63.9 90 38.9
Cpa.g.sc26.2 Carica papaya HOM05D001957 ORTHO05D002015 1.6e-08 63.9 111 37.8
Lalb_Chr16g0380231 Lupinus albus HOM05D001957 ORTHO05D002015 1.6e-08 63.9 109 37.6
Sc16g0004260 Simmondsia chinensis HOM05D001957 ORTHO05D002015 1.6e-08 63.9 109 34.9
Oeu064725.1 Olea europaea HOM05D001957 ORTHO05D002015 2.8e-08 63.2 73 46.6
Thecc.01G001500 Theobroma cacao HOM05D001957 ORTHO05D002015 2.8e-08 63.2 110 36.4
Ciclev10001099m.g Citrus clementina HOM05D001957 ORTHO05D002015 3.6e-08 62.8 96 40.6
Cc09_g10940 Coffea canephora HOM05D001957 ORTHO05D002015 3.6e-08 62.8 94 37.2
TPR.G38212 Trifolium pratense HOM05D001957 ORTHO05D002015 3.6e-08 62.8 90 43.3
Ciclev10030351m.g Citrus clementina HOM05D001957 ORTHO05D002015 4.7e-08 62.4 93 34.4
Lsat_1_v5_gn_8_26020 Lactuca sativa HOM05D001957 ORTHO05D002015 4.7e-08 62.4 110 36.4
Phvul.003G272200 Phaseolus vulgaris HOM05D001957 ORTHO05D002015 4.7e-08 62.4 113 37.2
Sed0020142 Sechium edule HOM05D001957 ORTHO05D002015 4.7e-08 62.4 113 37.2
HanXRQChr12g0367601 Helianthus annuus HOM05D001957 ORTHO05D002015 6.1e-08 62.0 112 35.7
FAN18G2634 Fragaria x ananassa HOM05D001957 ORTHO05D002015 8.0e-08 61.6 60 53.3
FAN28G1399 Fragaria x ananassa HOM05D001957 ORTHO05D002015 1.4e-07 60.8 89 40.4
Potri.004G208900 Populus trichocarpa HOM05D001957 ORTHO05D002015 1.4e-07 60.8 67 47.8
Sabra02G0002500 Salix brachista HOM05D001957 ORTHO05D002015 1.4e-07 60.8 137 35.8
Duzib041G0302 Durio zibethinus HOM05D001957 ORTHO05D002015 1.8e-07 60.5 84 41.7
Glyma.11G088400 Glycine max HOM05D001957 ORTHO05D002015 1.8e-07 60.5 78 43.6
Lalb_Chr09g0324881 Lupinus albus HOM05D001957 ORTHO05D002015 1.8e-07 60.5 93 37.6
HPP92_023785 Vanilla planifolia HOM05D001957 ORTHO05D002015 2.3e-07 60.1 107 33.6
Lj2g0005573 Lotus japonicus HOM05D001957 ORTHO05D002015 3.0e-07 59.7 108 35.2
Potri.011G145450 Populus trichocarpa HOM05D001957 ORTHO05D002015 3.0e-07 59.7 90 40.0
TWI36G1773 Tripterygium wilfordii HOM05D001957 ORTHO05D002015 3.0e-07 59.7 81 45.7
VMungo1215G0732 Vigna mungo HOM05D001957 ORTHO05D002015 3.0e-07 59.7 78 43.6
BcaC06g36280 Brassica carinata HOM05D001957 ORTHO05D002015 4.0e-07 59.3 101 39.6
Nn6g31605 Nelumbo nucifera HOM05D001957 ORTHO05D002015 4.0e-07 59.3 78 42.3
Phvul.002G119200 Phaseolus vulgaris HOM05D001957 ORTHO05D002015 4.0e-07 59.3 78 43.6
CSS0000295 Camellia sinensis var. sinensis HOM05D001957 ORTHO05D033862 5.2e-07 58.9 50 56.0
FAN04G2080 Fragaria x ananassa HOM05D001957 ORTHO05D002015 5.2e-07 58.9 60 53.3
C07p05860 Brassica napus HOM05D001957 ORTHO05D002015 6.8e-07 58.5 101 39.6
BolC7t40990H Brassica oleracea HOM05D001957 ORTHO05D002015 6.8e-07 58.5 101 39.6
Glyma.16G114800 Glycine max HOM05D001957 ORTHO05D002015 6.8e-07 58.5 107 35.5
QL11p056901 Quercus lobata HOM05D001957 ORTHO05D002015 6.8e-07 58.5 93 32.3
Atru.chr3.9 Acer truncatum HOM05D001957 ORTHO05D002015 1.2e-06 57.8 112 33.9
Carub.0002s2342 Capsella rubella HOM05D001957 ORTHO05D002015 1.2e-06 57.8 97 38.1
Duzib093G1802 Durio zibethinus HOM05D001957 ORTHO05D002015 1.2e-06 57.8 73 42.5
Sp5g31670 Schrenkiella parvula HOM05D001957 ORTHO05D002015 1.2e-06 57.8 98 35.7
MSTRG.24904 Avicennia marina HOM05D001957 ORTHO05D002015 1.5e-06 57.4 109 37.6
Glyma.01G156400 Glycine max HOM05D001957 ORTHO05D002015 1.5e-06 57.4 78 41.0
Sc15g0004030 Simmondsia chinensis HOM05D001957 ORTHO05D002015 1.5e-06 57.4 100 38.0
Potri.001G456500 Populus trichocarpa HOM05D001957 ORTHO05D002015 2.0e-06 57.0 92 38.0
SalBow1G8537 Salvia bowleyana HOM05D001957 ORTHO05D002015 2.0e-06 57.0 74 43.2
SEGI_01996 Sequoiadendron giganteum HOM05D001957 ORTHO05D002015 2.0e-06 57.0 75 44.0
FAN23G0754 Fragaria x ananassa HOM05D001957 ORTHO05D002015 2.6e-06 56.6 89 39.3
FAN23G2207 Fragaria x ananassa HOM05D001957 ORTHO05D002015 2.6e-06 56.6 89 39.3
Oeu025015.1 Olea europaea HOM05D001957 ORTHO05D002015 2.6e-06 56.6 92 40.2
TWI56G0752 Tripterygium wilfordii HOM05D001957 ORTHO05D002015 2.6e-06 56.6 81 44.4
AT1G76510 Arabidopsis thaliana HOM05D001957 ORTHO05D002015 3.4e-06 56.2 111 34.2
MSTRG.16963 Avicennia marina HOM05D001957 ORTHO05D002015 3.4e-06 56.2 76 42.1
Sabra04G0140800 Salix brachista HOM05D001957 ORTHO05D002015 3.4e-06 56.2 81 42.0
Hund19681 Selenicereus undatus HOM05D001957 ORTHO05D002015 4.4e-06 55.8 90 35.6
Thecc.08G098700 Theobroma cacao HOM05D001957 ORTHO05D002015 4.4e-06 55.8 84 38.1
Duzib147G1324 Durio zibethinus HOM05D001957 ORTHO05D002015 5.7e-06 55.5 106 34.0
AL2G36650 Arabidopsis lyrata HOM05D001957 ORTHO05D002015 7.5e-06 55.1 111 34.2
EL10Ac1g01082 Beta vulgaris HOM05D001957 ORTHO05D002015 7.5e-06 55.1 103 35.0
CARHR070060 Cardamine hirsuta HOM05D001957 ORTHO05D002015 7.5e-06 55.1 80 41.2
Lsat_1_v5_gn_3_48380 Lactuca sativa HOM05D001957 ORTHO05D002015 7.5e-06 55.1 90 40.0
ECA246G5155 Erigeron canadensis HOM05D001957 ORTHO05D002015 9.8e-06 54.7 78 43.6
Thhalv10018578m.g Eutrema salsugineum HOM05D001957 ORTHO05D002015 9.8e-06 54.7 81 42.0
Glyma.09G195700 Glycine max HOM05D001957 ORTHO05D002015 9.8e-06 54.7 106 35.8
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 9.8e-06 54.7 93 34.4


User provided reference genes

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