Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 5.4e-129 464.5 270 100.0
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 2.4e-124 449.1 266 97.0
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 3.8e-122 441.8 266 92.9
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 1.3e-117 426.8 266 93.2
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 2.8e-93 345.9 283 71.0
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 5.8e-91 338.2 275 63.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 9.3e-89 330.9 268 68.7
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 2.7e-88 329.3 268 67.9
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 7.9e-88 327.8 233 77.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 3.0e-87 325.9 265 69.8
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 5.1e-87 325.1 193 78.8
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 6.7e-87 324.7 263 60.5
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 8.7e-87 324.3 264 70.8
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 1.1e-86 323.9 270 64.1
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.9e-86 323.2 268 64.9
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 5.7e-86 321.6 193 81.9
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.2e-85 319.7 274 71.9
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 6.3e-85 318.2 264 66.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 6.3e-85 318.2 268 66.8
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 6.3e-85 318.2 191 78.5
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 6.3e-85 318.2 274 68.2
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 8.2e-85 317.8 273 73.3
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.1e-84 317.4 265 69.4
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 4.1e-84 315.5 270 66.7
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 9.0e-84 314.3 235 66.8
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.4e-83 312.4 261 70.5
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 4.5e-83 312.0 192 79.7
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 5.9e-83 311.6 274 65.7
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 2.9e-82 309.3 192 74.5
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.9e-82 309.3 192 74.5
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 1.4e-81 307.0 189 72.5
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 7.2e-81 304.7 189 76.2
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 2.7e-80 302.8 266 68.8
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 4.6e-80 302.0 192 71.9
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.4e-79 300.4 192 70.3
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 1.8e-79 300.1 234 70.1
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 2.3e-79 299.7 265 70.9
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 6.7e-79 298.1 192 74.0
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 2.0e-78 296.6 235 71.1
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 7.4e-78 294.7 190 74.7
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 7.4e-78 294.7 189 69.8
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 2.2e-77 293.1 232 66.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 6.3e-77 291.6 263 59.3
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 1.8e-76 290.0 193 66.8
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-75 287.0 274 61.3
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 5.0e-74 282.0 192 70.3
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 5.5e-73 278.5 192 63.5
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 7.2e-73 278.1 237 62.0
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 7.9e-72 274.6 192 64.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 1.8e-71 273.5 256 66.8
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 8.8e-71 271.2 189 70.4
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 4.4e-70 268.9 268 66.0
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 7.4e-70 268.1 268 66.0
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 7.4e-70 268.1 247 65.2
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 9.7e-70 267.7 268 66.0
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 1.7e-69 266.9 268 66.8
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 2.2e-69 266.5 268 66.4
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 2.8e-69 266.2 268 65.7
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 2.8e-69 266.2 259 57.1
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.1e-68 264.2 266 65.0
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.4e-68 263.1 255 64.3
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 3.1e-68 262.7 170 68.8
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.1e-68 262.7 213 81.7
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 1.2e-67 260.8 259 64.5
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 1.5e-67 260.4 268 61.2
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 2.0e-67 260.0 252 67.5
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.6e-67 259.6 173 74.0
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 3.5e-67 259.2 173 68.2
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.5e-67 258.8 169 69.8
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.3e-66 257.3 173 72.3
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.7e-66 256.9 235 63.8
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 5.0e-66 255.4 171 70.2
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 8.5e-66 254.6 171 69.6
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 8.5e-66 254.6 171 68.4
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 3.2e-65 252.7 171 66.7
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 5.5e-65 251.9 186 60.2
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 3.6e-64 249.2 177 63.3
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 4.7e-64 248.8 169 68.6
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.8e-63 246.9 168 66.7
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 2.0e-62 243.4 188 58.0
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 3.3e-62 242.7 216 69.0
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 3.1e-60 236.1 130 91.5
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 2.2e-58 229.9 262 58.0
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 3.2e-57 226.1 137 78.1
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 4.2e-57 225.7 148 67.6
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 5.5e-57 225.3 254 50.4
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 1.6e-56 223.8 203 71.4
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.0e-55 221.1 218 74.8
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 6.8e-55 218.4 188 63.3
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 2.2e-53 213.4 164 78.0
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 3.7e-53 212.6 212 54.2
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 2.4e-52 209.9 171 73.7
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 4.1e-52 209.1 171 61.4
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 7.7e-51 204.9 192 58.9
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.0e-50 204.5 220 48.2
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.0e-50 204.5 268 52.2
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 6.5e-50 201.8 137 77.4
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 1.2e-48 197.6 172 63.4
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 2.1e-48 196.8 211 65.9
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 4.7e-48 195.7 132 70.5
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.0e-47 193.0 136 69.1
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 4.4e-46 189.1 227 54.2
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.4e-44 183.3 137 67.9
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.4e-44 183.3 124 64.5
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.9e-42 176.4 179 69.8
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.8e-42 176.0 193 51.8
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.5e-38 164.1 196 63.3
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.8e-36 157.1 135 55.6
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.1e-33 147.9 179 42.5
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 2.8e-32 143.3 259 44.8
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 5.8e-30 135.6 94 68.1
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 2.0e-27 127.1 186 38.7
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 3.9e-26 122.9 190 38.9
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 3.9e-26 122.9 190 38.9
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 1.9e-25 120.6 121 52.9
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.5e-22 110.9 135 53.3
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 2.2e-21 107.1 145 55.2
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.1e-20 102.8 83 51.8
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.7e-19 100.1 62 72.6
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 1.7e-18 97.4 60 76.7
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.0e-18 96.7 62 71.0
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.5e-17 94.4 62 69.4
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 5.6e-17 92.4 62 67.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 1.1e-15 88.2 72 62.5
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 6.8e-15 85.5 136 34.6
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 3.4e-14 83.2 157 40.1
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.3e-13 81.3 69 59.4
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 2.2e-13 80.5 51 72.5
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 6.2e-08 62.4 36 80.6
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 8.1e-08 62.0 120 35.8


User provided reference genes

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