Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.0e-99 366.7 178 100.0
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.9e-99 365.2 178 99.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.3e-98 361.7 178 97.8
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 2.7e-92 342.0 176 91.5
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.6e-89 332.8 175 90.3
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.3e-83 312.4 176 83.0
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.2e-81 306.6 177 80.2
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 2.3e-80 302.4 175 78.9
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 4.0e-80 301.6 171 80.1
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 4.0e-80 301.6 175 78.9
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.0e-80 301.6 175 76.6
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 5.2e-80 301.2 170 80.6
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 8.9e-80 300.4 170 78.8
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 8.9e-80 300.4 172 79.1
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.4e-79 298.5 175 78.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.4e-79 298.5 177 75.7
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 5.8e-79 297.7 177 78.0
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 7.5e-79 297.4 173 79.2
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 9.9e-79 297.0 175 77.7
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.3e-78 296.6 175 78.3
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.7e-78 296.2 170 77.6
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.7e-78 296.2 175 78.3
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.2e-78 295.8 172 77.9
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 2.9e-78 295.4 175 75.4
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.9e-78 295.4 175 78.3
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 2.9e-78 295.4 170 80.0
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 4.9e-78 294.7 175 74.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.9e-78 294.7 173 75.7
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 6.4e-78 294.3 167 79.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 8.3e-78 293.9 188 74.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.1e-77 293.5 169 77.5
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.1e-77 293.5 175 76.6
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.1e-77 293.5 169 79.3
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-77 293.5 169 79.3
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.1e-77 293.5 168 79.2
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.1e-77 293.5 173 76.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.4e-77 293.1 167 80.2
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.4e-77 293.1 173 76.9
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.4e-77 293.1 168 80.4
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.9e-77 292.7 170 75.9
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.9e-77 292.7 169 77.5
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.4e-77 292.4 175 77.7
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.4e-77 292.4 174 74.7
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 3.2e-77 292.0 173 78.0
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 76.9
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 3.2e-77 292.0 168 79.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 4.1e-77 291.6 177 76.8
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 5.4e-77 291.2 175 76.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.4e-77 291.2 169 78.7
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 5.4e-77 291.2 174 74.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 5.4e-77 291.2 174 75.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 9.2e-77 290.4 169 76.9
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 9.2e-77 290.4 169 78.7
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 9.2e-77 290.4 174 77.6
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.2e-76 290.0 172 77.3
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.2e-76 290.0 174 77.0
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 168 79.2
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 2.7e-76 288.9 168 79.2
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 3.5e-76 288.5 167 80.8
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.5e-76 288.5 169 78.1
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 3.5e-76 288.5 176 76.1
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.6e-76 288.1 172 76.2
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.6e-76 288.1 166 78.3
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 7.8e-76 287.3 178 72.5
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 7.8e-76 287.3 174 74.7
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.0e-75 287.0 168 73.2
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.0e-75 287.0 171 77.2
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.3e-75 286.6 174 73.6
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.3e-75 286.6 170 75.3
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-75 286.2 167 77.2
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 1.7e-75 286.2 167 77.2
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.3e-75 285.8 174 73.0
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.0e-75 285.4 169 75.7
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.0e-75 285.4 178 73.0
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 3.9e-75 285.0 167 75.4
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 5.1e-75 284.6 171 74.3
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 5.1e-75 284.6 177 74.6
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 6.6e-75 284.3 174 74.1
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 1.1e-74 283.5 167 77.2
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.5e-74 282.3 168 78.0
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.3e-74 282.0 208 64.4
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 4.3e-74 281.6 174 73.0
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.6e-74 281.2 159 78.6
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 5.6e-74 281.2 173 75.7
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 7.3e-74 280.8 173 74.0
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 9.5e-74 280.4 172 72.7
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 3.6e-73 278.5 170 73.5
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.6e-73 278.5 175 71.4
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 3.6e-73 278.5 178 70.8
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.2e-73 277.7 173 72.8
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 8.1e-73 277.3 173 74.0
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 8.1e-73 277.3 166 75.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-72 276.9 168 78.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.4e-72 276.6 173 74.0
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 1.4e-72 276.6 162 78.4
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.8e-72 276.2 174 71.3
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 1.8e-72 276.2 176 71.0
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 3.1e-72 275.4 168 73.8
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 4.0e-72 275.0 174 73.0
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 8.9e-72 273.9 173 71.7
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.5e-71 273.1 168 72.6
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.5e-71 273.1 236 57.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.0e-71 272.7 167 71.9
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 2.0e-71 272.7 175 70.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.0e-71 272.7 158 81.0
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.6e-71 272.3 173 69.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 2.6e-71 272.3 170 71.2
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 5.8e-71 271.2 174 70.7
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 5.8e-71 271.2 173 69.9
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 9.9e-71 270.4 154 81.2
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 174 69.5
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.3e-70 270.0 173 71.1
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.7e-70 269.6 174 69.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.9e-70 268.9 173 69.9
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.9e-70 268.9 162 76.5
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-70 268.9 162 76.5
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 8.4e-70 267.3 175 69.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.4e-69 266.5 162 75.9
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.9e-69 266.2 162 75.9
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.2e-69 265.4 184 67.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 4.1e-69 265.0 176 68.8
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.2e-68 263.5 174 67.8
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 5.1e-67 258.1 168 67.3
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 7.3e-66 254.2 178 65.2
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.8e-65 252.3 168 67.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 4.7e-65 251.5 177 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.4e-64 250.0 163 67.5
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.2e-64 248.1 156 73.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.7e-62 243.0 168 69.6
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.7e-62 243.0 168 66.7
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.2e-60 236.9 167 62.9
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.6e-60 236.5 162 64.8
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 8.1e-57 224.2 169 60.4
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 6.4e-54 214.5 165 57.0
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.4e-54 214.5 158 67.1
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-51 206.8 102 94.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 6.7e-51 204.5 171 52.0
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-50 203.8 102 94.1
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.6e-49 199.9 114 80.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.7e-46 189.9 116 78.4
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 6.4e-46 188.0 123 68.3
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 4.6e-44 181.8 179 59.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 2.3e-43 179.5 178 47.8
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.1e-42 177.2 115 70.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.5e-42 176.8 167 53.9
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 9.6e-42 174.1 107 72.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-41 173.7 111 70.3
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-41 173.7 111 70.3
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 4.8e-41 171.8 101 75.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 6.9e-40 167.9 176 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 6.5e-38 161.4 103 70.9
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.3e-35 153.7 85 80.0
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 5.5e-29 131.7 126 54.0
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 9.3e-29 131.0 154 41.6
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 7.9e-28 127.9 79 69.6
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.5e-26 123.6 144 49.3
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 8.8e-19 97.8 63 68.3
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.1e-18 97.4 68 69.1
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.2e-17 93.2 67 61.2
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.8e-16 90.1 186 29.0
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.8e-16 90.1 67 61.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.3e-14 84.0 68 60.3
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 2.9e-14 82.8 79 49.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 4.4e-10 68.9 35 82.9
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.4e-08 63.9 48 64.6
PGSC0003DMG400005351 Solanum tuberosum HOM05D000190 ORTHO05D030681 5.0e-06 55.5 39 56.4


User provided reference genes

Program Settings