Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 5.3e-233 810.8 462 100.0
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 4.5e-232 807.7 462 99.8
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.3e-227 791.2 462 98.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.0e-220 770.0 462 94.6
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.4e-206 723.0 463 89.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 2.0e-195 686.0 461 86.3
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 6.5e-191 671.0 461 83.3
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.9e-190 669.5 461 83.3
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.5e-190 669.1 461 83.3
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 2.8e-186 655.6 459 80.4
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.7e-186 655.2 459 81.9
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.1e-185 653.7 459 82.8
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.4e-185 653.3 459 82.6
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 2.4e-185 652.5 461 82.2
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 1.0e-183 647.1 463 80.3
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 2.7e-181 639.0 462 80.3
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 6.1e-181 637.9 462 80.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 1.4e-180 636.7 462 80.3
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 2.3e-180 636.0 462 79.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.2e-180 634.8 459 76.9
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 8.8e-180 634.0 461 79.4
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.5e-179 633.3 462 78.6
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.3e-178 630.2 462 79.4
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.7e-178 629.8 462 79.9
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.7e-178 628.6 462 76.6
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.1e-177 627.1 459 78.6
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 2.4e-177 625.9 462 76.6
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.1e-177 625.2 462 79.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.4e-177 624.8 466 76.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 7.0e-177 624.4 465 78.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 5.9e-176 621.3 459 76.3
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.0e-175 620.5 477 75.9
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.3e-175 620.2 465 77.4
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-174 616.7 460 75.9
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 3.2e-174 615.5 459 76.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 4.2e-174 615.1 461 77.9
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.5e-174 614.8 464 78.2
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 7.2e-174 614.4 463 77.3
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.6e-173 613.2 483 74.1
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.7e-173 611.7 492 73.2
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 4.7e-173 611.7 462 76.8
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 8.0e-173 610.9 463 75.2
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.3e-172 609.4 465 70.5
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 3.0e-172 609.0 457 75.5
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 5.2e-172 608.2 460 74.8
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 8.8e-172 607.4 462 75.5
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.5e-171 604.4 464 77.4
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 7.5e-171 604.4 461 75.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.3e-170 603.6 464 77.4
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.3e-170 603.6 460 77.0
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.3e-170 603.6 461 77.4
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.1e-169 600.5 460 76.5
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.4e-169 600.1 459 76.9
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.8e-169 599.7 460 75.4
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.4e-169 599.4 462 75.3
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.1e-169 599.0 441 79.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 7.0e-169 597.8 462 75.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.2e-168 597.0 462 74.9
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.6e-168 596.7 462 76.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.5e-168 595.5 463 71.5
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.3e-167 593.6 459 75.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.7e-167 593.2 460 75.9
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.8e-167 592.0 460 77.0
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 6.6e-167 591.3 460 68.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 6.6e-167 591.3 460 68.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 2.5e-166 589.3 459 72.5
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.5e-166 589.3 460 75.0
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 4.3e-166 588.6 462 75.5
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 9.5e-166 587.4 459 74.3
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 9.5e-166 587.4 459 74.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.2e-165 587.0 505 64.2
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.1e-165 586.3 462 72.9
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 8.9e-164 580.9 462 72.9
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 8.9e-164 580.9 465 73.5
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.2e-163 580.5 462 72.9
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.6e-163 579.3 455 73.6
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 3.4e-163 578.9 455 74.5
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 9.8e-163 577.4 462 72.7
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 9.8e-163 577.4 462 73.2
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-162 577.0 462 72.3
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 2.9e-162 575.9 461 72.0
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 3.7e-162 575.5 455 73.4
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 6.4e-162 574.7 455 73.2
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.1e-161 573.9 455 73.0
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.6e-160 570.1 461 71.8
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 2.0e-160 569.7 466 71.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 3.9e-159 565.5 465 65.8
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 2.5e-158 562.8 461 72.2
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 4.7e-157 558.5 387 72.6
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.0e-156 557.4 389 72.0
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.7e-154 548.9 462 71.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 8.3e-154 547.7 389 72.0
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 8.3e-154 547.7 387 71.1
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.4e-153 547.0 462 71.0
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.9e-153 546.6 462 70.3
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 3.2e-153 545.8 461 70.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.7e-152 542.7 462 70.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 2.7e-152 542.7 462 69.9
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 5.0e-151 538.5 462 63.9
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.3e-150 535.8 551 62.3
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.3e-150 535.4 462 69.3
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 7.3e-150 534.6 462 68.4
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 6.2e-149 531.6 389 70.2
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 8.9e-148 527.7 460 68.0
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 7.1e-145 518.1 458 68.1
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 7.8e-144 514.6 463 59.6
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 4.7e-141 505.4 495 65.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.4e-140 503.8 409 75.6
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.2e-136 490.7 460 66.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.6e-136 490.3 462 64.9
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 4.7e-133 478.8 464 63.4
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.1e-129 464.9 384 72.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 4.0e-116 422.5 365 62.2
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 6.4e-114 415.2 463 56.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.4e-110 401.7 467 52.5
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.8e-101 372.5 461 50.8
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.8e-98 362.8 301 65.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 6.7e-95 352.1 314 64.3
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 7.4e-78 295.4 292 67.1
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.2e-65 253.4 395 40.3
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.4e-63 248.1 388 40.2
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.7e-58 231.1 243 53.9
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 8.6e-58 228.8 189 67.2
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 5.9e-51 206.1 505 40.6
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.7e-48 196.4 158 66.5
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-47 194.9 163 62.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.5e-46 189.1 123 74.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 7.8e-43 179.1 399 30.8
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.9e-37 160.6 513 33.5
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 3.2e-36 157.1 121 68.6
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.8e-32 144.1 135 61.5
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.4e-28 131.0 156 51.9
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 9.2e-20 102.4 68 76.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.6e-19 101.7 222 36.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 7.3e-17 92.8 91 59.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.1e-16 91.3 75 69.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 6.2e-16 89.7 100 81.0
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.8e-15 88.2 55 81.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.2e-11 75.5 60 60.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.3e-10 71.2 59 64.4
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 3.9e-10 70.5 62 56.5
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 6.6e-10 69.7 61 55.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 1.1e-09 68.9 71 50.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.9e-09 68.2 97 46.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.3e-08 65.5 49 73.5
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.3e-08 65.5 97 43.3
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 7.6e-06 56.2 113 38.9


User provided reference genes

Program Settings