Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 4.8e-106 387.9 201 100.0
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 5.1e-92 341.3 190 96.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 5.1e-92 341.3 190 96.8
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 2.6e-88 328.9 190 93.2
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.1e-86 323.6 190 92.1
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 2.3e-84 315.8 193 88.1
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 2.0e-83 312.8 190 87.4
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 2.0e-83 312.8 190 87.4
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 3.3e-83 312.0 190 86.8
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 7.4e-83 310.8 190 88.4
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 7.4e-83 310.8 190 87.9
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 7.4e-83 310.8 190 88.9
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.7e-83 310.5 192 87.0
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 9.7e-83 310.5 192 87.0
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.3e-82 310.1 190 87.4
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 2.8e-82 308.9 189 86.8
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.7e-82 308.5 192 87.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 8.2e-82 307.4 189 86.8
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.8e-81 306.2 190 86.8
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.8e-81 306.2 192 87.5
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.4e-81 305.8 191 86.9
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 2.4e-81 305.8 191 86.9
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 2.4e-81 305.8 190 87.4
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 2.4e-81 305.8 192 84.9
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 3.1e-81 305.4 190 86.8
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 3.1e-81 305.4 195 87.2
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 5.3e-81 304.7 190 84.7
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 5.3e-81 304.7 190 85.8
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.0e-81 304.3 190 85.3
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 7.0e-81 304.3 190 84.7
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 1.6e-80 303.1 190 87.4
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.0e-80 302.8 190 86.8
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.0e-80 302.8 190 86.8
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 2.0e-80 302.8 191 86.9
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 2.6e-80 302.4 196 83.2
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 2.6e-80 302.4 182 90.1
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 3.5e-80 302.0 190 85.3
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 3.5e-80 302.0 190 86.8
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 4.5e-80 301.6 195 83.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 5.9e-80 301.2 192 84.4
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 7.7e-80 300.8 191 84.3
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.0e-79 300.4 190 85.3
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.0e-79 300.4 181 87.8
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.2e-79 299.3 195 82.6
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.9e-79 298.9 190 84.7
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 2.9e-79 298.9 190 84.2
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.9e-79 298.9 197 82.2
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.9e-79 298.9 179 89.9
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 2.9e-79 298.9 194 83.0
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.9e-79 298.9 187 84.0
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 5.0e-79 298.1 194 84.5
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 5.0e-79 298.1 194 82.5
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 5.0e-79 298.1 190 84.2
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 6.5e-79 297.7 192 83.9
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.1e-78 297.0 193 83.4
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.1e-78 297.0 193 83.4
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.1e-78 297.0 190 82.6
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.1e-78 297.0 190 82.6
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.5e-78 296.6 190 84.2
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.5e-78 296.6 193 83.4
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.9e-78 296.2 190 84.7
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 3.2e-78 295.4 198 81.3
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 4.2e-78 295.0 190 83.7
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 4.2e-78 295.0 193 83.9
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 4.2e-78 295.0 184 87.5
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 5.5e-78 294.7 190 83.2
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 5.5e-78 294.7 190 83.2
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 5.5e-78 294.7 196 82.7
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 7.2e-78 294.3 190 82.6
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.2e-78 294.3 219 75.3
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 7.2e-78 294.3 184 87.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 7.2e-78 294.3 187 83.4
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 9.4e-78 293.9 187 81.8
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.2e-77 293.5 190 82.6
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-77 293.5 190 83.2
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 1.2e-77 293.5 189 83.1
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-77 293.5 194 83.5
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-77 293.1 184 87.0
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.6e-77 293.1 192 80.7
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.6e-77 293.1 194 84.0
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.6e-77 293.1 190 82.6
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 1.6e-77 293.1 189 82.5
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 2.1e-77 292.7 190 81.6
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 2.1e-77 292.7 190 81.6
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.7e-77 292.4 195 82.1
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 4.7e-77 291.6 190 82.6
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 6.1e-77 291.2 194 82.0
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 1.0e-76 290.4 186 83.9
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.4e-76 290.0 186 83.9
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 1.8e-76 289.7 194 82.0
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.8e-76 289.7 194 80.9
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 2.3e-76 289.3 190 82.1
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 3.0e-76 288.9 190 82.1
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 3.0e-76 288.9 190 82.1
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 3.0e-76 288.9 190 82.1
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.0e-76 288.9 184 82.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 4.0e-76 288.5 190 81.1
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 5.2e-76 288.1 194 81.4
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 6.7e-76 287.7 190 81.6
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 6.7e-76 287.7 194 80.9
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 6.7e-76 287.7 195 80.5
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 6.7e-76 287.7 194 81.4
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.0e-75 286.2 177 87.6
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.0e-75 286.2 190 81.6
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.6e-75 285.8 191 82.7
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 7.5e-75 284.3 187 80.2
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 7.5e-75 284.3 191 81.2
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.3e-74 283.5 193 80.3
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 6.3e-74 281.2 193 79.8
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.8e-73 279.6 192 79.2
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 3.1e-73 278.9 192 81.2
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.6e-72 276.6 177 83.6
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.6e-72 276.6 183 79.2
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.6e-72 276.6 181 80.1
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.7e-72 275.8 169 87.6
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 2.2e-71 272.7 191 78.0
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 1.9e-70 269.6 161 90.1
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 2.7e-69 265.8 161 86.3
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 6.1e-69 264.6 176 78.4
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 8.3e-66 254.2 185 71.9
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.1e-65 253.8 155 87.1
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.9e-63 245.7 196 73.0
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 9.5e-62 240.7 174 74.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 6.1e-61 238.0 184 71.7
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 5.9e-56 221.5 183 68.3
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.8e-55 218.8 127 89.8
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 2.6e-51 206.1 159 72.3
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 4.1e-49 198.7 122 91.0
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 6.0e-48 194.9 124 87.1
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 3.0e-47 192.6 121 85.1
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 3.0e-47 192.6 121 86.0
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 8.6e-47 191.0 121 86.8
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-46 188.7 149 70.5
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.2e-44 181.8 110 90.0
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.0e-43 179.9 110 87.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.2e-41 172.6 104 90.4
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.9e-38 163.3 114 73.7
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.1e-33 147.5 88 90.9
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.6e-29 132.5 82 84.1
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 6.6e-23 111.7 81 72.8
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 4.0e-20 102.4 64 79.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.4e-17 93.2 66 75.8
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.8e-12 77.0 168 36.3
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 9.6e-06 54.7 44 68.2


User provided reference genes

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