Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.9e-98 360.1 167 100.0
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 8.9e-98 360.1 167 100.0
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 9.2e-95 350.1 167 95.8
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 8.9e-82 307.0 167 83.2
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.9e-80 301.2 167 83.2
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.6e-78 296.2 167 80.8
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 2.1e-78 295.8 168 81.5
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 71.3
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 73.7
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 73.7
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.3e-69 266.5 167 71.3
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 73.1
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.1e-69 264.6 167 71.3
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 70.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 72.5
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 71.9
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.1e-68 263.5 167 71.3
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 70.1
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.6e-68 261.2 166 70.5
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 9.6e-68 260.4 167 68.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.3e-67 260.0 167 70.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 71.9
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 70.7
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 69.5
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 4.8e-67 258.1 167 70.1
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 4.8e-67 258.1 166 70.5
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 4.8e-67 258.1 167 70.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 8.1e-67 257.3 166 70.5
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.1e-66 256.9 166 69.9
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 71.3
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 2.4e-66 255.8 167 68.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.4e-66 255.8 166 70.5
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 2.4e-66 255.8 167 67.7
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 69.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 69.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 69.5
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 9.0e-66 253.8 167 68.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 9.0e-66 253.8 167 68.3
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.0e-65 252.7 167 69.5
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.6e-65 252.3 167 70.1
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 3.4e-65 251.9 167 68.9
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.6e-65 250.8 179 65.4
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 9.9e-65 250.4 167 67.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.9e-65 250.4 167 67.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 9.9e-65 250.4 167 68.3
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.7e-64 249.6 164 68.3
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.2e-64 249.2 167 66.5
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.9e-64 248.8 167 67.1
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 3.8e-64 248.4 167 68.3
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.9e-64 248.1 167 67.7
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.1e-63 246.9 164 67.1
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 4.2e-63 245.0 167 65.3
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 5.4e-63 244.6 164 69.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-63 243.8 166 64.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 65.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.6e-62 243.0 165 68.5
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.1e-62 242.7 165 68.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 64.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.5e-62 241.9 167 66.5
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.5e-62 241.9 167 65.9
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 65.5
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.0e-61 240.4 168 65.5
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.3e-61 240.0 168 65.5
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 65.5
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 1.8e-61 239.6 168 65.5
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.0e-61 238.8 168 64.9
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 63.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 5.1e-61 238.0 168 64.9
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 5.1e-61 238.0 168 64.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 5.1e-61 238.0 167 63.5
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 64.9
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 64.9
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 6.7e-61 237.7 168 64.9
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 8.7e-61 237.3 168 63.7
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.1e-60 236.9 167 63.5
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.1e-60 236.9 174 62.1
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.5e-60 236.5 166 65.1
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.9e-60 236.1 168 64.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.5e-60 235.7 164 64.0
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 63.5
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.4e-60 234.2 167 62.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.6e-60 233.8 167 62.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 3.7e-59 231.9 167 63.5
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 4.8e-59 231.5 189 58.2
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.8e-58 229.6 178 61.2
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.8e-58 229.6 167 64.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.3e-58 228.0 167 59.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 6.9e-58 227.6 168 63.7
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.0e-57 226.1 131 78.6
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 3.4e-57 225.3 164 63.4
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 7.6e-57 224.2 167 61.1
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 7.6e-57 224.2 168 63.1
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 9.9e-57 223.8 167 65.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.4e-55 219.2 173 60.1
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 2.4e-55 219.2 167 59.3
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-55 217.2 203 51.7
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 9.3e-55 217.2 167 56.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.7e-54 215.7 219 49.8
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 3.5e-54 215.3 167 56.3
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.0e-53 212.2 189 52.4
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.1e-52 210.3 165 61.2
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.9e-52 209.5 156 59.6
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 9.6e-52 207.2 189 54.5
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.1e-50 203.8 165 57.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 5.3e-50 201.4 167 53.9
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 5.3e-50 201.4 137 64.2
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.5e-47 192.6 127 65.4
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 2.5e-47 192.6 166 53.6
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 5.5e-47 191.4 166 55.4
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 2.7e-46 189.1 134 64.2
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 7.4e-44 181.0 166 51.2
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.3e-43 180.3 126 62.7
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.3e-43 180.3 167 48.5
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.1e-42 175.3 167 52.7
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 6.9e-42 174.5 176 46.0
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.5e-41 173.3 167 50.3
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.4e-41 172.2 116 66.4
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 1.0e-40 170.6 177 50.8
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.6e-38 163.3 165 46.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.6e-38 161.8 134 53.0
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.1e-38 161.4 133 53.4
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 7.9e-38 161.0 166 45.8
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 7.9e-38 161.0 122 59.0
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 3.9e-37 158.7 164 47.0
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.5e-36 156.0 160 47.5
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 7.4e-36 154.5 164 47.0
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.3e-35 153.7 97 68.0
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.3e-35 153.7 97 68.0
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-35 153.7 130 53.1
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 6.3e-35 151.4 131 59.5
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.5e-33 146.7 98 64.3
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.5e-33 146.7 117 59.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.2e-31 138.7 158 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 4.7e-30 135.2 127 46.5
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.7e-30 135.2 150 45.3
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.3e-27 127.1 148 47.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 6.3e-27 124.8 97 57.7
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 9.4e-23 110.9 183 38.8
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.1e-22 109.8 112 50.0
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.3e-21 106.3 79 55.7
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.9e-21 105.5 165 37.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 5.2e-21 105.1 101 53.5
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 8.8e-21 104.4 165 37.0
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.2e-19 97.8 123 39.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.5e-15 86.3 89 44.9
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 60 58.3
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-15 84.7 60 58.3
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.6e-14 83.6 57 59.6
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.7e-14 82.0 58 58.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-13 80.5 60 56.7
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.3e-13 79.7 169 28.4
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-12 76.6 57 56.1
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.4e-12 75.5 57 54.4
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.7e-12 75.1 115 35.7
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.7e-09 66.2 61 47.5
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 2.9e-08 62.8 54 59.3
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 3.2e-07 59.3 41 61.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 7.2e-07 58.2 83 34.9
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 7.2e-07 58.2 36 69.4
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.1e-06 56.6 40 70.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 2.7e-06 56.2 45 62.2
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.1e-06 55.1 40 52.5


User provided reference genes

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