Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 8.7e-290 999.6 505 100.0
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.0e-285 986.1 502 99.4
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 2.5e-276 954.9 502 96.2
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.9e-252 875.5 504 88.9
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.8e-250 869.0 504 87.7
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.6e-236 820.8 506 83.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 6.0e-182 641.3 493 64.9
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.1e-179 632.9 499 64.9
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.6e-177 625.9 473 67.2
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.4e-177 625.5 510 67.5
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 6.5e-176 621.3 503 64.8
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.1e-174 616.3 503 63.2
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 6.9e-170 601.3 492 62.4
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 4.5e-169 598.6 509 61.9
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.9e-168 595.9 494 62.8
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 3.8e-168 595.5 496 62.5
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 5.0e-168 595.1 494 62.3
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 8.5e-168 594.3 500 63.4
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.9e-167 593.2 488 63.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.2e-166 590.5 493 61.7
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 4.6e-166 588.6 490 61.6
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 4.6e-166 588.6 492 62.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.0e-165 587.4 489 63.6
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 6.7e-165 584.7 493 61.3
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 6.7e-165 584.7 489 63.4
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.1e-164 583.9 496 61.1
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.0e-164 583.2 438 66.7
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 2.0e-164 583.2 474 61.6
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 4.3e-164 582.0 486 62.6
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 5.7e-164 581.6 493 61.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.3e-163 580.5 495 60.8
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.7e-163 580.1 504 60.7
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.7e-163 578.9 495 60.6
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.7e-163 578.9 495 60.6
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.7e-163 578.9 494 60.5
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 6.3e-163 578.2 491 62.3
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.4e-162 577.0 508 57.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.8e-162 576.6 476 62.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.4e-162 576.2 490 62.9
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 3.1e-162 575.9 493 60.9
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 5.3e-162 575.1 486 60.1
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 9.1e-162 574.3 502 60.2
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.6e-161 572.8 491 60.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 5.9e-161 571.6 495 59.4
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 5.9e-161 571.6 491 60.7
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 7.7e-161 571.2 490 59.8
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.0e-160 570.9 495 59.2
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.7e-160 570.1 491 59.9
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 6.5e-160 568.2 497 60.0
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 8.5e-160 567.8 504 60.7
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 5.5e-159 565.1 495 59.0
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 9.4e-159 564.3 601 51.2
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.2e-158 563.9 487 59.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 7.9e-158 561.2 493 60.6
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 7.9e-158 561.2 446 64.3
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 3.9e-157 558.9 490 58.2
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.6e-156 556.2 435 64.4
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 5.7e-156 555.1 508 57.9
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 5.7e-156 555.1 437 63.4
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.4e-154 549.7 436 64.2
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 4.1e-154 548.9 488 58.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.2e-153 547.4 496 57.7
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.6e-153 546.2 500 58.4
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.5e-153 545.8 481 59.7
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.5e-153 545.8 436 64.2
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 3.5e-153 545.8 497 58.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 7.7e-153 544.7 468 60.0
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.8e-152 542.3 504 57.1
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 5.5e-151 538.5 492 58.5
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.7e-150 535.4 480 57.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 6.1e-150 535.0 439 64.0
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.8e-149 533.5 488 57.0
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.4e-148 528.9 497 57.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 5.7e-148 528.5 447 60.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 8.2e-147 524.6 471 56.7
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.4e-146 523.1 496 56.5
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.0e-144 517.7 451 60.3
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 2.2e-144 516.5 497 56.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 5.0e-144 515.4 496 55.8
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 5.0e-144 515.4 496 55.8
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 8.5e-144 514.6 478 57.1
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.5e-143 513.8 486 56.6
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 5.5e-143 511.9 510 55.3
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.6e-142 509.2 451 59.6
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 4.7e-142 508.8 480 56.5
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.1e-142 508.4 497 54.3
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 8.0e-142 508.1 416 61.5
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 8.0e-142 508.1 431 59.9
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.0e-141 507.7 472 55.3
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.8e-141 506.9 490 57.1
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 8.8e-141 504.6 515 53.6
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 3.4e-140 502.7 438 58.7
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 4.4e-140 502.3 433 59.1
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 5.7e-140 501.9 479 55.3
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 5.7e-140 501.9 484 55.2
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.7e-140 501.9 499 53.9
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 6.3e-139 498.4 497 52.9
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 7.0e-138 495.0 500 53.8
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-137 494.2 424 60.8
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.6e-137 493.8 506 53.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 4.2e-135 485.7 508 52.0
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.6e-134 483.8 498 53.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 6.1e-134 481.9 511 51.3
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.0e-133 481.1 502 51.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.2e-133 478.8 454 58.4
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 8.8e-133 478.0 466 54.7
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 7.5e-132 474.9 449 55.9
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 9.8e-132 474.6 497 53.5
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.8e-131 473.0 461 53.6
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 6.3e-131 471.9 497 52.1
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.1e-127 461.1 509 50.3
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.4e-125 454.1 427 56.7
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-124 449.1 408 57.4
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 4.6e-121 439.1 497 50.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.7e-120 437.2 400 59.2
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.8e-117 427.2 386 58.8
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.6e-113 412.5 322 62.4
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.0e-112 411.4 415 55.4
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.1e-111 407.9 430 53.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 4.7e-110 402.5 331 61.6
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.8e-108 395.6 476 47.7
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-102 376.7 306 61.8
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.0e-100 370.5 427 50.8
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 4.3e-95 352.8 483 43.5
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.4e-93 347.8 363 54.5
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.9e-91 340.1 301 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.2e-89 334.7 478 41.0
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 6.9e-85 318.9 419 44.4
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.1e-81 307.4 200 74.5
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.4e-74 284.6 294 52.4
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 7.1e-74 282.3 313 48.9
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 5.1e-72 276.2 283 50.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.0e-69 266.5 288 52.8
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.7e-67 261.2 491 33.8
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.2e-66 256.5 238 59.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.3e-64 251.5 188 65.4
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.7e-49 200.7 167 62.9
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 3.9e-48 196.8 125 73.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.0e-40 172.2 320 32.5
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.1e-39 168.7 278 37.1
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 4.5e-36 156.8 150 58.7
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.4e-29 134.4 242 34.7
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.5e-26 124.4 89 62.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 3.6e-25 120.6 84 66.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.0e-23 114.8 80 62.5
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.7e-19 101.7 125 48.8
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.0e-16 92.4 155 38.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 6.8e-16 89.7 66 63.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 8.8e-16 89.4 65 64.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-15 87.0 65 63.1
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.9e-11 74.3 57 64.9
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 2.5e-10 71.2 46 67.4
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 5.7e-07 60.1 391 22.3
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 4.9e-06 57.0 31 74.2
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 4.9e-06 57.0 124 33.9
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 8.3e-06 56.2 213 29.6


User provided reference genes

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