Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.1e-72 276.6 140 100.0
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.0e-70 270.0 140 97.1
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.4e-64 249.6 137 90.5
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.6e-47 191.4 141 69.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-45 186.4 138 70.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.0e-42 176.0 137 70.1
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-27 127.1 140 52.1
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.4e-24 116.7 136 50.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.5e-21 106.7 135 43.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.9e-21 106.3 137 43.8
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.3e-21 105.5 139 46.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 9.6e-21 104.0 137 43.8
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-20 103.6 138 44.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.8e-20 101.7 135 43.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.8e-20 101.7 128 45.3
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.4e-19 100.1 128 41.4
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.4e-19 99.4 130 43.8
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.4e-19 99.4 130 42.3
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.1e-19 99.0 130 41.5
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.1e-19 99.0 116 45.7
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 4.0e-19 98.6 129 43.4
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 5.3e-19 98.2 134 39.6
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.2e-18 97.1 125 44.0
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-18 97.1 136 39.7
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.5e-18 96.7 137 41.6
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.0e-18 96.3 133 40.6
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.0e-18 96.3 130 43.8
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.0e-18 96.3 128 43.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.0e-18 96.3 138 39.1
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.6e-18 95.9 136 40.4
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.6e-18 95.9 136 38.2
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.5e-18 95.1 130 43.8
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.5e-18 95.1 130 43.8
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 5.8e-18 94.7 114 44.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.0e-17 94.0 130 43.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.3e-17 93.6 139 41.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.7e-17 93.2 130 40.8
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.7e-17 93.2 138 39.9
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 2.2e-17 92.8 128 38.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.2e-17 92.8 117 44.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.9e-17 92.4 130 42.3
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.8e-17 92.0 121 39.7
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.4e-16 90.1 138 39.9
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.4e-16 90.1 124 42.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.9e-16 89.7 138 40.6
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.9e-16 89.7 136 40.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.9e-16 89.7 131 40.5
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 4.2e-16 88.6 118 44.1
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-16 88.6 138 38.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.2e-16 88.6 138 38.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 4.2e-16 88.6 117 45.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 4.2e-16 88.6 124 42.7
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.2e-16 88.6 128 36.7
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.5e-16 88.2 138 38.4
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 7.1e-16 87.8 128 39.1
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 9.3e-16 87.4 132 38.6
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.2e-15 87.0 136 36.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.2e-15 87.0 134 38.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-15 87.0 126 38.1
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.6e-15 86.7 133 35.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.6e-15 86.7 131 40.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.1e-15 86.3 139 38.8
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.1e-15 86.3 126 39.7
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.7e-15 85.9 119 42.0
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.6e-15 85.1 124 39.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 7.9e-15 84.3 131 39.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.9e-15 84.3 140 35.0
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.0e-14 84.0 137 38.0
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.0e-14 84.0 127 39.4
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.0e-14 84.0 135 38.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.8e-14 83.2 133 36.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.8e-14 83.2 112 44.6
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.3e-14 82.8 127 37.8
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.9e-14 82.0 116 44.8
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 5.1e-14 81.6 117 45.3
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 5.1e-14 81.6 132 40.9
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.1e-14 81.6 133 36.1
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 5.1e-14 81.6 135 36.3
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 6.7e-14 81.3 117 37.6
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 6.7e-14 81.3 132 37.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.1e-13 80.5 122 36.9
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.5e-13 80.1 140 35.7
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.3e-13 78.6 130 40.0
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 7.4e-13 77.8 130 40.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 7.4e-13 77.8 124 37.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 9.6e-13 77.4 123 37.4
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.6e-12 76.6 115 40.9
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.1e-12 76.3 127 38.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.8e-12 75.1 137 35.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.8e-12 75.1 137 35.8
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 4.8e-12 75.1 133 38.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 8.2e-12 74.3 117 42.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 8.2e-12 74.3 117 42.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 8.2e-12 74.3 136 35.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.2e-12 74.3 128 33.6
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.4e-11 73.6 137 33.6
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.4e-11 73.6 118 41.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 5.3e-11 71.6 134 31.3
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.3e-11 71.6 137 35.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 6.9e-11 71.2 127 35.4
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.6e-10 69.3 138 36.2
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.4e-10 68.9 121 42.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.5e-10 68.6 140 35.0
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.9e-10 68.2 117 40.2
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 7.6e-10 67.8 117 40.2
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 7.6e-10 67.8 119 37.0
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.3e-09 67.0 116 35.3
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.7e-09 66.6 117 38.5
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.7e-09 66.6 121 41.3
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.2e-09 66.2 105 41.0
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.8e-09 65.5 117 38.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.8e-09 65.5 117 38.5
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 5.0e-09 65.1 117 37.6
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 6.5e-09 64.7 117 40.2
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 8.5e-09 64.3 117 37.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-08 63.5 114 36.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.4e-08 63.5 114 36.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.9e-08 63.2 145 32.4
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 2.5e-08 62.8 121 39.7
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 7.2e-08 61.2 108 38.0
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.2e-07 60.5 114 36.0
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 1.2e-07 60.5 130 30.0
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.1e-07 59.7 120 33.3
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.6e-07 58.5 113 37.2
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.1e-07 58.2 149 33.6
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 7.9e-07 57.8 110 35.5
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.0e-06 57.4 135 31.9
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 5.1e-06 55.1 135 32.6


User provided reference genes

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