Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 7.0e-85 317.8 230 100.0
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 2.0e-63 246.5 176 79.5
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.2e-37 159.5 190 64.7
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.2e-28 131.0 168 53.0
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.3e-26 122.9 181 48.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 4.0e-24 115.9 157 63.7
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 5.3e-24 115.5 168 45.8
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.4e-21 107.5 177 42.4
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.6e-20 104.0 170 55.9
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.3e-18 96.3 168 39.3
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 1.8e-16 90.5 168 40.5
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 4.0e-16 89.4 184 40.2
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 2.2e-14 83.6 173 45.7
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 6.0e-12 75.5 149 42.3
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-11 74.3 169 37.9
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-11 74.3 169 37.9
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.8e-11 73.9 169 37.9
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 1.8e-11 73.9 173 43.9
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 3.9e-11 72.8 176 47.7
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 6.7e-11 72.0 57 66.7
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 6.7e-11 72.0 57 66.7
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 1.1e-10 71.2 158 44.3
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.1e-10 71.2 63 58.7
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.9e-10 70.5 161 43.5
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.5e-10 70.1 69 55.1
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 3.3e-10 69.7 48 70.8
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 3.3e-10 69.7 180 37.8
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.3e-10 69.7 83 48.2
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.3e-10 69.3 45 71.1
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 4.3e-10 69.3 184 34.2
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 5.6e-10 68.9 45 68.9
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 7.4e-10 68.6 44 68.2
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 9.6e-10 68.2 171 38.6
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.3e-09 67.8 149 47.7
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.3e-09 67.8 149 47.7
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.3e-09 67.8 149 47.7
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.3e-09 67.8 71 52.1
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.6e-09 67.4 82 48.8
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.6e-09 67.4 59 59.3
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 2.8e-09 66.6 64 53.1
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 3.7e-09 66.2 162 38.3
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 3.7e-09 66.2 62 54.8
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 3.7e-09 66.2 76 47.4
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.7e-09 66.2 175 33.7
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 4.8e-09 65.9 83 45.8
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 8.1e-09 65.1 150 38.7
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.1e-08 64.7 65 52.3
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 1.1e-08 64.7 74 47.3
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.4e-08 64.3 64 54.7
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-08 64.3 56 60.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-08 64.3 56 60.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 2.4e-08 63.5 63 57.1
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 2.4e-08 63.5 171 34.5
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 3.1e-08 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 3.1e-08 63.2 49 61.2
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 3.1e-08 63.2 184 32.6
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 4.0e-08 62.8 45 66.7
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 4.0e-08 62.8 148 34.5
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.0e-08 62.8 98 42.9
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 5.3e-08 62.4 86 46.5
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 6.9e-08 62.0 165 41.8
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.9e-08 62.0 75 50.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.9e-08 62.0 58 56.9
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 6.9e-08 62.0 48 64.6
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 6.9e-08 62.0 73 47.9
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 6.9e-08 62.0 45 66.7
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 9.0e-08 61.6 67 50.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 9.0e-08 61.6 67 50.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 9.0e-08 61.6 171 31.6
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 1.2e-07 61.2 43 67.4
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 2.0e-07 60.5 78 47.4
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 2.0e-07 60.5 168 40.5
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 2.0e-07 60.5 46 65.2
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 2.0e-07 60.5 62 53.2
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.0e-07 60.5 159 40.3
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.0e-07 60.5 41 65.9
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.6e-07 60.1 183 34.4
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.6e-07 60.1 57 57.9
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 4.5e-07 59.3 173 38.2
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.5e-07 59.3 42 69.0
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 5.8e-07 58.9 62 50.0
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 7.6e-07 58.5 178 30.3
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.3e-06 57.8 161 31.1
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.3e-06 57.8 64 48.4
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.3e-06 57.8 48 54.2
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 1.7e-06 57.4 74 45.9
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 2.2e-06 57.0 62 51.6
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 2.2e-06 57.0 85 42.4
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.9e-06 56.6 45 62.2
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 3.8e-06 56.2 150 40.7
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.8e-06 56.2 98 39.8
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.8e-06 56.2 42 61.9
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 4.9e-06 55.8 75 46.7
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 6.4e-06 55.5 42 61.9
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 8.4e-06 55.1 62 46.8
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 8.4e-06 55.1 56 53.6


User provided reference genes

Program Settings