Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.8e-30 135.2 65 100.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-29 132.5 65 98.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.4e-29 131.0 65 96.9
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 9.9e-29 129.4 65 95.4
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-28 129.0 65 95.4
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 4.9e-28 127.1 61 100.0
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.5e-27 123.6 65 92.3
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 4.6e-26 120.6 65 87.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.3e-23 112.5 63 82.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.1e-23 111.7 63 81.0
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.8e-23 110.5 61 88.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 6.2e-23 110.2 62 80.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 6.2e-23 110.2 62 79.0
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 8.1e-23 109.8 63 81.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.1e-22 109.4 62 80.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.1e-22 109.4 65 78.5
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-22 108.6 61 83.6
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.8e-22 108.6 63 77.8
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.4e-22 108.2 60 88.3
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.1e-22 107.8 62 83.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.1e-22 107.8 63 76.2
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.1e-22 107.8 64 81.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.3e-22 107.1 62 82.3
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.9e-22 106.7 62 75.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 9.0e-22 106.3 63 74.6
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.0e-22 106.3 63 76.2
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.5e-21 105.5 59 81.4
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.0e-21 105.1 63 76.2
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.0e-21 105.1 63 76.2
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.0e-21 105.1 63 76.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.4e-21 104.4 63 79.4
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 3.4e-21 104.4 63 79.4
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 4.5e-21 104.0 62 82.3
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 4.5e-21 104.0 63 79.4
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.8e-21 103.6 65 78.5
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 5.8e-21 103.6 65 73.8
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.3e-20 102.4 65 73.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.9e-20 101.3 56 80.4
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.8e-20 100.9 63 74.6
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.8e-20 100.9 60 78.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.9e-20 100.5 63 79.4
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.9e-20 100.5 54 85.2
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 8.4e-20 99.8 56 80.4
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.1e-19 99.4 56 78.6
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.9e-19 98.6 63 73.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.2e-19 97.8 60 73.3
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.2e-19 97.8 63 71.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.2e-19 97.4 64 68.8
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.2e-19 97.4 56 76.8
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.1e-19 96.7 57 75.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.1e-19 96.7 64 75.0
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.3e-19 96.3 55 78.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 9.3e-19 96.3 59 76.3
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 9.3e-19 96.3 57 73.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.2e-18 95.9 56 75.0
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.6e-18 95.5 62 71.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.1e-18 95.1 58 74.1
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 2.7e-18 94.7 54 75.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.7e-18 94.7 66 65.2
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.5e-18 94.4 63 74.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.6e-18 94.0 66 65.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.6e-18 94.0 55 76.4
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 4.6e-18 94.0 58 70.7
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 6.0e-18 93.6 56 73.2
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 6.0e-18 93.6 55 78.2
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 6.0e-18 93.6 55 76.4
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 6.0e-18 93.6 61 73.8
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.0e-18 93.6 58 75.9
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-17 92.4 59 74.6
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-17 92.4 59 74.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.3e-17 91.7 58 72.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.3e-17 91.7 63 68.3
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.0e-17 91.3 58 72.4
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-17 90.9 59 72.9
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.9e-17 90.9 55 72.7
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 5.1e-17 90.5 59 72.9
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.1e-17 90.5 55 72.7
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 8.7e-17 89.7 52 84.6
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.1e-16 89.4 56 71.4
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-16 89.4 56 71.4
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-16 89.4 56 71.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.1e-16 89.4 61 68.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-16 89.0 53 75.5
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-16 89.0 53 75.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-16 89.0 53 75.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.5e-16 89.0 53 75.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-16 89.0 53 75.5
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-16 88.6 59 71.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.9e-16 88.6 55 69.1
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.9e-16 88.6 60 65.0
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.9e-16 88.6 58 67.2
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.9e-16 88.6 58 67.2
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.9e-16 88.6 59 67.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.3e-16 87.8 65 67.7
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 4.3e-16 87.4 64 65.6
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 9.6e-16 86.3 55 69.1
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.3e-15 85.9 53 71.7
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.3e-15 85.9 64 62.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.6e-15 85.5 52 73.1
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.8e-15 84.7 56 73.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.8e-15 84.7 53 66.0
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.8e-15 84.0 53 69.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.8e-15 84.0 53 69.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 4.8e-15 84.0 53 69.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 6.3e-15 83.6 52 69.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 6.3e-15 83.6 62 67.7
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 6.3e-15 83.6 53 69.8
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 8.2e-15 83.2 56 69.6
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.1e-14 82.8 50 74.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.8e-14 82.0 53 67.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.1e-14 81.3 55 70.9
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.9e-14 80.1 54 68.5
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-13 79.3 40 92.5
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.4e-13 77.8 40 90.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.5e-13 77.4 53 60.4
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 7.6e-13 76.6 51 68.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.6e-13 76.6 60 61.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.3e-12 75.9 56 64.3
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.3e-12 75.9 59 54.2
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.9e-12 74.7 42 76.2
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 8.4e-12 73.2 53 64.2
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 8.4e-12 73.2 56 62.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 8.4e-12 73.2 61 60.7
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 4.2e-11 70.9 53 64.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.6e-10 68.9 62 59.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.5e-10 67.8 34 94.1
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 4.6e-10 67.4 34 91.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.8e-09 65.5 62 56.5
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.1e-09 63.9 35 82.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.5e-08 62.4 34 82.4
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.9e-08 62.0 53 45.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.9e-08 62.0 53 45.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.5e-08 61.6 56 46.4
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.3e-08 61.2 34 85.3
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-07 58.9 35 80.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-07 58.5 57 52.6
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 8.2e-07 56.6 54 53.7
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-06 56.2 34 76.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.1e-06 56.2 34 76.5
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.1e-06 56.2 56 44.6
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.8e-06 55.5 57 47.4
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.4e-06 55.1 59 40.7
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.4e-06 55.1 57 45.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 4.1e-06 54.3 53 43.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.3e-06 53.9 31 77.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 6.9e-06 53.5 56 39.3


User provided reference genes

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