Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.9e-165 585.9 314 100.0
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 1.1e-162 576.6 314 99.0
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 6.9e-160 567.4 314 96.2
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 8.7e-147 523.9 313 90.1
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.6e-132 475.3 316 84.2
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 2.6e-127 459.1 316 82.3
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 3.4e-106 389.0 258 83.7
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.4e-104 382.9 258 82.6
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 3.1e-104 382.5 319 70.5
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 4.1e-96 355.5 258 76.4
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 2.3e-91 339.7 315 65.4
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 3.3e-85 319.3 334 59.6
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.6e-85 318.5 319 59.6
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 7.3e-85 318.2 315 60.0
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 1.6e-84 317.0 321 59.5
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 6.2e-84 315.1 317 59.9
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 4.0e-83 312.4 326 59.5
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 6.8e-83 311.6 328 58.5
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 8.9e-83 311.2 320 57.8
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.5e-82 310.5 324 59.6
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 2.6e-82 309.7 358 53.6
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 3.4e-82 309.3 308 59.7
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 5.8e-82 308.5 316 59.2
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 9.8e-82 307.8 317 59.3
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.8e-82 307.8 324 56.8
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.3e-81 307.4 325 56.6
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 2.2e-81 306.6 356 53.7
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 2.9e-81 306.2 316 57.9
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 1.1e-80 304.3 323 56.3
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 2.4e-80 303.1 320 58.1
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.2e-79 300.8 321 58.9
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 6.0e-79 298.5 317 55.2
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 7.8e-79 298.1 318 56.9
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.7e-78 297.0 323 56.0
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.7e-78 297.0 318 60.1
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 2.3e-78 296.6 311 59.8
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 3.9e-78 295.8 308 59.1
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 5.1e-78 295.4 333 54.7
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 5.1e-78 295.4 313 57.8
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.5e-77 293.9 315 57.8
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 1.9e-77 293.5 319 58.6
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.5e-77 293.1 320 57.8
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 3.3e-77 292.7 311 58.8
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 3.3e-77 292.7 318 57.2
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 8.1e-76 288.1 331 56.8
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.0e-75 285.8 319 57.1
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 5.2e-75 285.4 315 56.5
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 6.8e-75 285.0 321 57.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.5e-74 283.9 227 69.6
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.6e-74 283.1 318 56.6
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 7.6e-74 281.6 353 52.7
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 6.4e-73 278.5 322 55.3
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 8.4e-73 278.1 332 52.7
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.4e-72 277.3 332 52.4
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.9e-72 276.9 319 53.3
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.2e-72 276.2 326 54.0
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 5.4e-72 275.4 323 54.8
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 9.2e-72 274.6 330 51.8
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.2e-71 274.2 316 53.8
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 1.6e-71 273.9 330 52.7
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 2.1e-71 273.5 330 52.1
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 2.7e-71 273.1 320 54.4
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.6e-71 272.3 324 54.9
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 4.6e-71 272.3 322 55.6
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.0e-70 271.2 331 52.9
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.0e-70 271.2 327 54.7
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 1.0e-70 271.2 314 55.1
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.3e-70 270.8 317 54.9
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 8.6e-70 268.1 305 53.1
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 3.3e-69 266.2 331 50.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.3e-69 265.8 319 53.3
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 9.6e-69 264.6 315 52.4
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 2.8e-68 263.1 312 53.8
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 6.2e-68 261.9 321 52.0
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 8.1e-68 261.5 335 51.3
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-67 260.4 323 51.1
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 1.8e-67 260.4 342 50.3
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 2.4e-67 260.0 336 50.6
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 6.8e-67 258.5 323 51.1
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.2e-66 257.7 322 53.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.5e-66 257.3 321 53.9
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.5e-66 257.3 331 51.1
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 2.0e-66 256.9 329 51.1
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 3.4e-66 256.1 315 54.0
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 4.4e-66 255.8 318 52.8
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 5.8e-66 255.4 314 51.9
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 5.8e-66 255.4 314 51.9
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 9.9e-66 254.6 328 51.2
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.3e-65 254.2 321 50.8
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.3e-65 254.2 321 50.8
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 8.4e-65 251.5 194 69.6
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.1e-64 251.1 341 51.6
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 7.1e-64 248.4 317 51.1
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 9.3e-64 248.1 321 50.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 4.6e-63 245.7 316 50.0
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 7.8e-63 245.0 307 51.5
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.0e-62 244.6 315 49.2
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 3.0e-62 243.0 319 49.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 1.3e-60 237.7 322 48.8
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 2.8e-60 236.5 314 49.0
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.2e-60 235.3 311 49.5
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 1.5e-58 230.7 199 64.3
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 1.5e-58 230.7 199 64.3
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 3.8e-57 226.1 328 48.2
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 6.6e-54 215.3 344 43.9
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 4.3e-53 212.6 212 58.5
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 4.3e-53 212.6 311 46.3
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 4.3e-53 212.6 311 46.3
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 5.6e-53 212.2 313 46.3
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 7.4e-53 211.8 314 44.9
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 1.2e-50 204.5 176 65.3
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 2.0e-50 203.8 269 49.1
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 1.9e-48 197.2 187 57.8
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.1e-47 193.7 188 56.4
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 1.0e-46 191.4 314 44.3
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 6.7e-46 188.7 260 48.1
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.5e-45 187.6 240 49.2
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 7.4e-45 185.3 194 57.7
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 3.4e-42 176.4 342 40.4
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 7.6e-42 175.3 241 49.8
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 2.2e-41 173.7 203 49.3
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.9e-40 170.6 264 45.8
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 6.0e-39 165.6 210 52.4
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.3e-38 163.7 173 55.5
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.3e-38 163.7 203 47.3
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 6.7e-38 162.2 235 48.5
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.5e-37 161.0 307 39.7
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.8e-36 156.8 225 48.9
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 3.7e-36 156.4 258 41.1
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.1e-35 154.8 199 50.3
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 9.0e-35 151.8 198 43.9
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.5e-33 145.2 321 39.6
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 8.5e-33 145.2 215 46.0
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.4e-32 144.4 278 41.7
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.2e-32 143.3 109 67.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.7e-31 140.2 102 75.5
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-30 137.9 211 42.2
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 8.7e-30 135.2 150 52.7
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 7.7e-26 122.1 108 62.0
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 8.5e-25 118.6 98 66.3
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 3.3e-21 106.7 154 48.1
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 5.7e-21 105.9 312 35.6
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 7.4e-21 105.5 101 62.4
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 6.9e-19 99.0 82 61.0
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 3.2e-16 90.1 99 57.6
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 8.8e-14 82.0 82 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 3.3e-13 80.1 79 57.0
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 3.8e-09 66.6 95 44.2
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 7.2e-08 62.4 54 59.3
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.4e-06 58.2 140 34.3


User provided reference genes

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