Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.8e-34 148.7 73 100.0
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.8e-34 148.7 73 100.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.5e-30 134.0 74 90.5
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 6.5e-29 130.2 74 87.8
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-28 128.6 73 86.3
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 2.5e-28 128.3 73 83.6
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 9.4e-28 126.3 73 80.8
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 9.4e-28 126.3 73 80.8
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 9.4e-28 126.3 73 83.6
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 80.8
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 83.6
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.1e-27 123.6 69 84.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 8.0e-27 123.2 73 80.8
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 79.5
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.4e-26 122.5 73 80.8
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 78.1
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 2.3e-26 121.7 74 82.4
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 74 82.4
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 2.3e-26 121.7 69 81.2
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 78.1
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 4.0e-26 120.9 73 79.5
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 76.7
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 5.2e-26 120.6 73 79.5
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.8e-26 120.2 74 81.1
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.8e-26 120.2 74 81.1
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.8e-26 120.2 74 81.1
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.8e-26 120.2 74 81.1
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 8.8e-26 119.8 73 79.5
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 76.7
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.0e-25 118.6 73 76.7
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 2.6e-25 118.2 75 77.3
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.6e-25 118.2 73 74.0
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.6e-25 118.2 61 95.1
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 3.4e-25 117.9 71 76.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 3.4e-25 117.9 74 79.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 3.4e-25 117.9 74 79.7
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 3.4e-25 117.9 73 78.1
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.4e-25 117.5 71 81.7
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 5.7e-25 117.1 73 75.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 7.5e-25 116.7 69 78.3
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 9.8e-25 116.3 73 76.7
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 9.8e-25 116.3 73 75.3
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.3e-24 115.9 73 75.3
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.3e-24 115.9 71 77.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.7e-24 114.4 71 78.9
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.7e-24 114.4 76 76.3
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 3.7e-24 114.4 69 75.4
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.7e-24 114.4 69 75.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.9e-24 114.0 71 78.9
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.9e-24 114.0 69 75.4
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.9e-24 114.0 73 75.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.9e-24 114.0 73 75.3
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 76.7
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 75.3
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.3e-24 113.6 73 75.3
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 8.3e-24 113.2 73 72.6
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 8.3e-24 113.2 66 78.8
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.3e-24 113.2 71 74.6
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 8.3e-24 113.2 69 76.8
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.1e-23 112.8 74 75.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 75.3
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 74.0
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 73 72.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-23 112.5 67 79.1
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.4e-23 112.5 73 72.6
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.8e-23 112.1 73 72.6
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.8e-23 112.1 73 74.0
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.8e-23 112.1 68 77.9
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 74.0
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.4e-23 111.7 74 70.3
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.4e-23 111.7 74 70.3
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 72.6
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 71 74.6
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 3.1e-23 111.3 68 77.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 4.1e-23 110.9 68 77.9
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 4.1e-23 110.9 68 77.9
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 4.1e-23 110.9 73 74.0
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 4.1e-23 110.9 74 73.0
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 4.1e-23 110.9 73 72.6
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 73 69.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.4e-23 110.5 75 77.3
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.4e-23 110.5 73 71.2
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 7.0e-23 110.2 71 74.6
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 9.1e-23 109.8 68 77.9
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 63 79.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.2e-22 109.4 79 69.6
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.6e-22 109.0 74 74.3
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-22 109.0 74 74.3
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.6e-22 109.0 74 74.3
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.6e-22 109.0 74 74.3
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.0e-22 108.6 71 70.4
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.0e-22 108.6 74 73.0
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.0e-22 108.6 71 73.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.7e-22 108.2 69 72.5
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.7e-22 108.2 73 71.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.7e-22 108.2 63 79.4
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.7e-22 108.2 73 72.6
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.5e-22 107.8 73 68.5
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.5e-22 107.8 71 73.2
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 4.5e-22 107.5 63 79.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 4.5e-22 107.5 63 79.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 4.5e-22 107.5 63 79.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.5e-22 107.5 68 77.9
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 5.9e-22 107.1 63 77.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 5.9e-22 107.1 63 77.8
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.9e-22 107.1 71 71.8
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.9e-22 107.1 71 71.8
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 5.9e-22 107.1 63 77.8
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.0e-21 106.3 63 77.8
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.0e-21 106.3 74 70.3
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.0e-21 106.3 71 71.8
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.0e-21 106.3 71 71.8
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-21 105.5 71 70.4
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.7e-21 105.5 71 71.8
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 2.3e-21 105.1 73 68.5
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.3e-21 105.1 63 77.8
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.9e-21 104.8 73 67.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.8e-21 104.4 68 72.1
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 5.0e-21 104.0 62 75.8
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.1e-20 102.8 95 56.8
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.1e-20 102.8 73 68.5
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.5e-20 102.4 61 73.8
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.5e-20 102.4 68 72.1
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 76 67.1
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 88 61.4
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.3e-20 101.3 76 67.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.2e-20 100.9 83 62.7
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.2e-20 100.1 63 73.0
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.7e-19 97.4 101 50.5
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 4.7e-19 97.4 63 69.8
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 6.1e-19 97.1 61 70.5
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 8.0e-19 96.7 97 53.6
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.4e-18 95.9 56 78.6
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.4e-18 95.9 58 74.1
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 5.2e-18 94.0 97 52.6
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.5e-17 90.1 56 76.8
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.3e-16 89.4 56 80.4
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-16 89.4 56 71.4
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.7e-16 89.0 57 73.7
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.7e-16 89.0 56 73.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 2.8e-16 88.2 56 71.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.7e-16 87.8 66 60.6
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 8.3e-16 86.7 66 63.6
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 8.3e-16 86.7 56 71.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.1e-15 86.3 56 76.8
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.4e-15 85.9 56 71.4
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.4e-15 85.9 89 51.7
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.4e-15 85.9 56 73.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.4e-15 85.1 56 75.0
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 3.2e-15 84.7 56 66.1
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 3.2e-15 84.7 57 73.7
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 9.2e-15 83.2 56 67.9
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.2e-14 82.8 124 40.3
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.7e-14 81.6 56 71.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.6e-14 80.9 56 66.1
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 7.8e-14 80.1 62 53.2
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.3e-13 79.3 63 61.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.3e-13 79.3 56 66.1
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 2.3e-13 78.6 59 61.0
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 5.0e-13 77.4 48 75.0
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 5.0e-13 77.4 62 50.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-12 76.3 49 69.4
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 3.3e-12 74.7 56 66.1
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.1e-11 70.5 58 60.3
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.0e-09 65.5 38 78.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.6e-09 65.1 45 73.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.8e-09 63.9 40 70.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.7e-08 62.4 38 73.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.4e-08 60.5 58 55.2
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.3e-08 60.1 40 65.0
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 1.1e-07 59.7 51 54.9
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-07 59.3 58 53.4
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.1e-07 57.8 57 54.4


User provided reference genes

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