Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.1e-97 359.0 180 100.0
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.1e-97 359.0 180 100.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 4.2e-93 344.7 176 98.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.6e-87 323.9 176 91.5
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.1e-85 320.1 168 94.6
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.1e-85 320.1 176 92.6
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 7.1e-85 317.4 168 93.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.9e-82 309.3 168 91.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.3e-81 306.6 176 86.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 3.7e-81 305.1 176 84.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.5e-79 299.7 176 84.1
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.0e-79 299.3 176 84.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.4e-79 298.5 179 83.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.4e-79 298.5 176 85.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 5.8e-79 297.7 175 84.6
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 5.8e-79 297.7 175 84.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.3e-78 296.6 176 84.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.2e-78 295.8 176 83.0
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.9e-78 295.4 163 89.6
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.9e-78 295.4 176 83.5
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.9e-78 295.4 176 83.0
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-78 295.0 176 84.1
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 8.4e-78 293.9 177 81.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.9e-77 292.7 180 80.6
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.5e-77 292.4 176 83.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-77 291.6 176 83.0
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-77 291.6 176 83.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 5.5e-77 291.2 199 75.9
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 5.5e-77 291.2 175 84.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 5.5e-77 291.2 168 86.3
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.6e-76 289.7 181 78.5
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.7e-76 288.9 179 79.9
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-76 288.9 179 81.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.7e-76 288.9 179 81.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 4.6e-76 288.1 163 89.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 7.9e-76 287.3 179 78.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.0e-75 287.0 178 81.5
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.3e-75 286.6 177 81.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.3e-75 285.8 176 80.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.3e-75 285.8 178 79.8
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.0e-75 285.4 179 82.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.0e-75 285.4 179 79.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 80.4
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.9e-75 285.0 176 80.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 3.9e-75 285.0 175 81.1
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 5.1e-75 284.6 178 80.3
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.1e-75 284.6 176 80.1
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.1e-75 284.6 178 80.3
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 6.7e-75 284.3 183 78.1
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 6.7e-75 284.3 168 83.3
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 8.7e-75 283.9 179 78.2
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 8.7e-75 283.9 176 80.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 1.1e-74 283.5 179 78.8
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.1e-74 283.5 159 86.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-74 283.1 161 85.1
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.9e-74 282.7 178 80.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 4.3e-74 281.6 180 77.8
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 7.4e-74 280.8 177 79.1
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.6e-73 279.6 155 89.0
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.6e-73 279.6 161 84.5
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.1e-73 279.3 184 77.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.8e-73 278.1 174 82.8
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.8e-73 278.1 159 85.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.8e-73 278.1 159 85.5
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-72 276.9 160 85.0
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.8e-72 276.2 172 78.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 2.4e-72 275.8 174 82.2
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 3.1e-72 275.4 161 82.0
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.1e-72 275.0 179 77.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 5.3e-72 274.6 175 77.7
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 9.0e-72 273.9 165 81.2
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 9.0e-72 273.9 182 76.4
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 2.0e-71 272.7 158 84.8
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-71 272.7 160 83.8
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-71 272.3 174 76.4
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.4e-71 271.9 168 83.3
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.4e-71 271.9 160 83.8
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 3.4e-71 271.9 158 83.5
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 5.9e-71 271.2 188 73.9
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 5.9e-71 271.2 159 83.6
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.9e-71 271.2 159 83.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 7.6e-71 270.8 159 84.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 7.6e-71 270.8 178 76.4
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.0e-70 270.4 159 81.8
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-70 270.4 174 76.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.3e-70 270.0 176 73.3
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.7e-70 269.6 168 82.7
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 3.8e-70 268.5 175 73.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.8e-70 268.5 176 73.3
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 6.5e-70 267.7 159 83.0
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.4e-69 266.5 162 80.2
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 1.9e-69 266.2 179 76.0
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 5.5e-69 264.6 168 78.0
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 5.5e-69 264.6 172 75.0
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.6e-68 263.1 178 72.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.6e-68 263.1 145 89.7
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.1e-68 262.7 167 77.2
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.7e-68 262.3 171 77.8
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.7e-68 262.3 145 89.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.8e-67 259.6 179 72.1
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.0e-67 258.8 145 86.2
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.5e-66 256.5 144 88.2
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-66 256.1 174 72.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 3.3e-66 255.4 137 92.7
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.3e-65 253.4 148 85.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.2e-65 252.7 176 69.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 4.8e-65 251.5 184 69.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 8.2e-65 250.8 168 76.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.1e-64 250.4 142 85.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.4e-64 249.2 139 86.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.4e-64 249.2 137 91.2
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 7.7e-63 244.2 175 72.6
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.2e-62 242.7 158 75.3
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.9e-62 242.3 172 70.3
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.4e-59 233.4 154 74.0
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.7e-59 231.1 176 69.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 5.9e-55 218.0 135 83.0
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.9e-54 215.7 155 72.9
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 5.5e-53 211.5 166 57.8
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.4e-51 206.8 161 65.2
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.1e-50 203.8 110 91.8
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.2e-49 199.5 179 53.6
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 8.2e-49 197.6 117 80.3
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.4e-48 196.8 117 87.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.1e-48 195.7 109 86.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-45 186.8 143 67.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-42 177.2 125 70.4
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 4.4e-42 175.3 113 77.9
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.3e-38 163.7 137 62.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.9e-38 162.5 150 53.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 3.2e-37 159.1 100 78.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 8.8e-35 151.0 126 63.5
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.8e-35 151.0 77 93.5
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.3e-33 144.8 116 68.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.3e-33 144.4 115 67.0
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 1.6e-31 140.2 187 47.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.9e-30 136.0 93 74.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-30 135.6 77 83.1
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-29 133.7 68 92.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-29 133.7 77 85.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.2e-29 132.5 154 50.0
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.1e-28 129.8 81 79.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 7.5e-26 121.3 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 3.1e-24 115.9 65 87.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.7e-20 102.1 77 68.8
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.0e-19 99.0 66 74.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 5.7e-18 95.1 52 86.5
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.4e-16 89.7 58 77.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.2e-16 89.4 58 72.4


User provided reference genes

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