Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 0.0e+00 2018.4 989 100.0
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 0.0e+00 2006.5 989 99.4
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 0.0e+00 1873.6 989 91.7
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 0.0e+00 1760.3 947 90.3
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 0.0e+00 1739.2 1011 85.2
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 0.0e+00 1561.6 988 76.3
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 0.0e+00 1535.4 988 74.3
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1515.0 987 74.6
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 0.0e+00 1501.5 986 72.3
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 0.0e+00 1491.5 905 82.1
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 0.0e+00 1477.2 990 71.6
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 0.0e+00 1467.6 994 72.0
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 0.0e+00 1458.7 791 90.0
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 0.0e+00 1442.6 985 71.2
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 0.0e+00 1430.6 1084 65.9
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 0.0e+00 1430.2 981 70.5
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 0.0e+00 1426.0 980 70.7
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 0.0e+00 1406.3 980 70.2
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 0.0e+00 1406.3 982 68.7
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 0.0e+00 1406.0 987 68.8
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 0.0e+00 1400.2 981 69.1
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 0.0e+00 1399.8 983 68.5
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 0.0e+00 1396.7 1021 67.6
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 0.0e+00 1386.3 983 69.5
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 0.0e+00 1381.3 989 68.0
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 0.0e+00 1376.7 990 67.9
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 0.0e+00 1367.1 982 67.4
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1365.5 991 65.7
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 0.0e+00 1364.7 989 66.9
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 0.0e+00 1362.4 968 68.1
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 0.0e+00 1360.9 985 67.3
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 0.0e+00 1357.8 985 67.2
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 0.0e+00 1356.7 994 66.7
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 0.0e+00 1356.7 980 67.2
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 0.0e+00 1355.1 981 67.7
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 0.0e+00 1352.8 985 66.9
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 0.0e+00 1350.9 980 67.3
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 0.0e+00 1348.2 981 66.8
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 0.0e+00 1347.0 983 66.2
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 0.0e+00 1341.6 988 66.1
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 0.0e+00 1340.1 986 66.5
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1339.7 991 66.2
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 0.0e+00 1332.4 1012 64.4
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1332.4 982 65.0
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 0.0e+00 1332.4 985 65.2
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 0.0e+00 1320.1 988 64.9
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 0.0e+00 1318.5 995 65.5
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1315.8 985 64.8
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 0.0e+00 1315.4 989 64.3
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 0.0e+00 1309.3 981 65.4
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 0.0e+00 1307.4 1002 64.4
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 0.0e+00 1307.4 989 64.4
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 0.0e+00 1304.3 1007 64.8
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1298.9 1077 61.3
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 0.0e+00 1297.7 991 62.6
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 0.0e+00 1290.8 983 64.9
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 0.0e+00 1286.2 987 63.6
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 0.0e+00 1284.6 931 67.2
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1276.9 980 64.9
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 0.0e+00 1276.5 986 64.1
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 0.0e+00 1268.8 977 63.7
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1257.3 1044 61.0
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 0.0e+00 1255.7 981 64.2
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 0.0e+00 1254.2 987 61.5
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 0.0e+00 1253.4 928 65.0
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 0.0e+00 1248.8 980 62.8
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 0.0e+00 1246.1 1076 59.5
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 0.0e+00 1228.0 994 60.0
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 0.0e+00 1219.1 988 61.6
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 0.0e+00 1214.1 981 61.7
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1203.3 923 62.6
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 0.0e+00 1197.6 989 59.4
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 0.0e+00 1186.0 1001 61.1
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 0.0e+00 1170.6 1108 55.7
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 0.0e+00 1152.5 989 58.1
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 0.0e+00 1123.2 811 67.1
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 0.0e+00 1101.7 998 56.2
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 0.0e+00 1099.0 991 53.9
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 0.0e+00 1084.7 826 65.0
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 0.0e+00 1075.1 989 55.8
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 3.0e-310 1068.5 978 56.3
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 4.3e-309 1064.7 988 55.4
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 1.6e-308 1062.8 997 54.0
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 1.0e-305 1053.5 978 54.7
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.7e-305 1052.7 978 54.8
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 2.1e-303 1045.8 980 55.0
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 1.0e-302 1043.5 979 54.1
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.8e-299 1032.7 980 54.6
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 4.5e-298 1028.1 979 53.0
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.1e-296 1023.5 980 53.4
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 7.9e-295 1017.3 980 52.8
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 1.0e-294 1016.9 815 62.9
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 2.3e-294 1015.8 959 54.2
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 3.3e-293 1011.9 980 53.0
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 1.0e-289 1000.3 994 52.1
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.2e-289 999.2 981 52.7
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.3e-284 983.4 649 72.3
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 1.6e-279 966.5 751 62.2
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 1.2e-277 960.3 952 50.6
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 4.8e-276 954.9 1005 47.7
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 1.6e-266 923.3 716 62.8
SGA_v2.0_scaffold424G51468 Striga asiatica HOM05D003289 ORTHO05D004594 1.3e-257 893.6 667 65.2
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 7.8e-242 841.3 804 54.0
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 7.8e-242 841.3 627 66.0
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 1.1e-227 794.3 1239 42.0
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 1.9e-203 713.8 946 43.8
HanXRQChr09g0249481 Helianthus annuus HOM05D003289 ORTHO05D004594 7.9e-178 628.6 555 57.8
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 2.5e-171 607.1 512 56.1
HanXRQChr09g0249471 Helianthus annuus HOM05D003289 ORTHO05D004594 1.7e-159 567.8 434 62.9
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 2.2e-156 557.4 433 61.4
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 2.6e-152 543.9 1118 32.3
ATR0820G074 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.7e-140 504.6 410 61.7
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 3.0e-132 477.2 374 61.2
CDE02G3060 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.8e-121 441.4 387 56.1
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 4.0e-113 413.7 1022 30.3
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 1.5e-107 395.2 995 28.2
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 6.2e-106 389.8 996 26.8
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 2.1e-93 348.2 730 32.6
CiPaw.13G138800 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.8e-92 345.1 235 69.4
SGA_v2.0_scaffold424G51466 Striga asiatica HOM05D003289 ORTHO05D018396 3.2e-86 324.3 302 55.0
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 3.8e-71 274.2 239 58.6
RcHm_v2.0_Chr5g0054881 Rosa chinensis HOM05D003289 ORTHO05D028359 2.7e-69 268.1 187 69.0
Rhsim05G0032400 Rhododendron simsii HOM05D003289 ORTHO05D004594 3.1e-65 254.6 235 58.3
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 1.8e-52 212.2 170 63.5
COL.COLO4_06999 Corchorus olitorius HOM05D003289 ORTHO05D004594 6.3e-50 203.8 262 45.8
HPP92_025208 Vanilla planifolia HOM05D003289 ORTHO05D028359 6.3e-50 203.8 303 39.9
Aqoxy3G01424 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 8.5e-39 166.8 180 49.4
BcaB03g13343 Brassica carinata HOM05D003289 ORTHO05D004594 1.6e-37 162.5 126 61.9
MBI18_g03519_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 3.6e-37 161.4 133 58.6
BcaC07g41675 Brassica carinata HOM05D003289 ORTHO05D026451 8.0e-37 160.2 223 44.8
CARHR055750 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.3e-34 152.9 115 61.7
Aqoxy4G01245 Aquilegia oxysepala HOM05D003289 ORTHO05D018396 8.3e-34 150.2 180 47.2
DCAR_017672 Daucus carota HOM05D003289 ORTHO05D004594 1.5e-27 129.4 84 72.6
Phvul.006G055950 Phaseolus vulgaris HOM05D003289 ORTHO05D028359 3.2e-25 121.7 76 69.7
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 4.6e-24 117.9 99 57.6
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 1.0e-23 116.7 104 52.9
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 5.6e-22 110.9 84 58.3
TPR.G35944 Trifolium pratense HOM05D003289 ORTHO05D004594 9.5e-22 110.2 63 76.2
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 5.8e-19 100.9 171 37.4
MBI06_g41845_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 1.3e-15 89.7 171 34.5
Aa31LG1G180 Aethionema arabicum HOM05D003289 ORTHO05D004594 6.2e-13 80.9 100 45.0
Nitab4.5_0003532g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 8.1e-13 80.5 40 95.0
Nitab4.5_0004240g0030 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.8e-12 79.3 40 92.5
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.3e-12 79.0 52 75.0
SEGI_20214 Sequoiadendron giganteum HOM05D003289 ORTHO05D000003 9.8e-11 73.6 80 45.0
BolC5t29401H Brassica oleracea HOM05D003289 ORTHO05D028359 2.9e-10 72.0 100 43.0
SEGI_12002 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 6.4e-10 70.9 80 45.0
CARHR055740 Cardamine hirsuta HOM05D003289 ORTHO05D026451 1.4e-09 69.7 98 44.9
Peaxi162Scf00544g00920 Petunia axillaris HOM05D003289 ORTHO05D004594 2.7e-08 65.5 36 80.6
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 7.8e-08 63.9 39 71.8
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 3.9e-07 61.6 88 45.5
A09p63570 Brassica napus HOM05D003289 ORTHO05D026451 1.5e-06 59.7 80 47.5


User provided reference genes

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