Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g067110.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 6.4e-257 890.2 434 100.0
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 4.3e-253 877.5 429 99.1
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 1.8e-243 845.5 430 95.1
Nitab4.5_0003532g0040 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.5e-232 808.5 445 89.4
Nitab4.5_0004240g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 2.3e-230 802.0 445 88.8
Peaxi162Scf00544g00922 Petunia axillaris HOM05D003289 ORTHO05D004594 8.2e-220 766.9 424 89.2
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 4.5e-218 761.1 425 85.6
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 4.2e-216 754.6 429 84.6
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 3.6e-215 751.5 429 83.7
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 7.9e-215 750.4 429 83.7
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 1.5e-213 746.1 429 83.2
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 2.6e-213 745.3 422 82.9
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 1.7e-212 742.7 419 83.5
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 3.1e-211 738.4 432 82.4
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 5.3e-211 737.6 422 83.4
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 2.2e-209 732.3 425 81.6
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 6.5e-209 730.7 424 82.8
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 8.5e-209 730.3 429 80.7
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 1.1e-208 729.9 424 81.8
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 9.4e-208 726.9 422 81.0
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 3.6e-207 724.9 423 80.1
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 4.7e-207 724.5 422 81.5
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 1.0e-206 723.4 425 81.4
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.8e-206 722.6 422 81.3
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 3.9e-206 721.5 430 80.2
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 5.2e-206 721.1 429 80.7
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 6.7e-206 720.7 424 80.4
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 6.7e-206 720.7 421 81.5
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 1.1e-205 719.9 423 80.6
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 1.5e-205 719.5 423 80.4
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 2.0e-205 719.2 423 80.6
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 2.8e-204 715.3 429 79.7
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 2.8e-204 715.3 426 79.8
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 8.2e-204 713.8 422 80.6
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 4.1e-203 711.4 422 79.9
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 5.3e-203 711.1 423 80.9
Psat7g189880 Pisum sativum HOM05D003289 ORTHO05D004594 1.6e-202 709.5 424 79.0
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 2.0e-202 709.1 423 78.7
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 1.0e-201 706.8 430 79.1
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 1.3e-201 706.4 422 79.4
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 1.7e-201 706.1 423 79.4
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.9e-201 705.3 423 78.3
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 2.9e-201 705.3 424 78.8
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 2.9e-201 705.3 423 78.5
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 6.5e-201 704.1 423 78.3
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 6.5e-201 704.1 425 77.9
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.1e-200 703.4 421 78.1
FAN21G1989 Fragaria x ananassa HOM05D003289 ORTHO05D004594 1.9e-200 702.6 423 79.4
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 3.2e-200 701.8 423 79.4
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 3.2e-200 701.8 423 79.2
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 4.2e-200 701.4 424 78.5
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 5.5e-200 701.0 423 79.4
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 1.6e-199 699.5 423 77.3
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 2.7e-199 698.7 424 79.5
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 2.7e-199 698.7 432 78.0
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 3.6e-199 698.4 441 76.0
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 4.7e-199 698.0 424 79.2
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 4.7e-199 698.0 423 77.3
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 1.8e-198 696.0 423 76.6
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 2.3e-198 695.7 424 77.8
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 2.3e-198 695.7 424 77.8
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 5.2e-198 694.5 426 77.5
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 6.7e-198 694.1 423 76.6
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 8.8e-198 693.7 423 76.4
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 8.8e-198 693.7 427 76.6
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 8.8e-198 693.7 424 78.3
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 8.8e-198 693.7 425 77.6
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 1.2e-197 693.3 423 76.4
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 1.5e-197 693.0 423 76.4
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 2.6e-197 692.2 423 75.9
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 9.7e-197 690.3 478 72.0
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.3e-196 689.9 427 76.1
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 1.3e-196 689.9 427 76.1
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 6.3e-196 687.6 421 80.0
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 5.3e-195 684.5 472 71.0
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 1.2e-194 683.3 430 76.3
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 7.7e-194 680.6 422 75.8
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 7.2e-192 674.1 436 75.7
Glyma.11G237700 Glycine max HOM05D003289 ORTHO05D004594 6.1e-191 671.0 453 72.6
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 1.0e-190 670.2 419 73.7
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 5.2e-190 667.9 430 73.3
Os02g0511900 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 8.8e-190 667.2 417 75.1
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 8.8e-190 667.2 419 75.4
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 4.4e-189 664.8 404 75.7
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 5.7e-189 664.5 422 76.1
Hma1.2p1_0305F.1_g119455 Hydrangea macrophylla HOM05D003289 ORTHO05D004594 1.1e-187 660.2 374 83.2
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.8e-187 659.4 404 75.2
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 1.8e-187 659.4 419 77.3
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.4e-187 659.1 429 75.3
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 5.4e-187 657.9 423 73.5
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 3.5e-186 655.2 432 75.5
ATR0820G092 Amborella trichopoda HOM05D003289 ORTHO05D004594 2.3e-185 652.5 409 74.6
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 1.3e-180 636.7 461 69.8
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 3.7e-180 635.2 430 72.1
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 5.4e-171 604.7 413 67.6
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 7.8e-170 600.9 422 66.1
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 2.0e-165 586.3 405 68.4
CAN.G1177.10 Capsicum annuum HOM05D003289 ORTHO05D004594 4.4e-165 585.1 369 80.5
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 6.2e-159 564.7 402 66.2
Ah.08g215950 Amaranthus hybridus HOM05D003289 ORTHO05D004594 1.9e-155 553.1 423 65.7
Cpa.g.sc32.133 Carica papaya HOM05D003289 ORTHO05D004594 3.3e-144 515.8 300 79.7
CDE02G3768 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 5.6e-144 515.0 422 61.6
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 2.2e-140 503.1 442 55.4
MELO3C002892.2 Cucumis melo HOM05D003289 ORTHO05D004594 3.5e-138 495.7 431 58.7
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 5.6e-136 488.4 278 81.3
QL02p000127 Quercus lobata HOM05D003289 ORTHO05D004594 2.6e-133 479.6 271 81.2
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 3.4e-125 452.6 459 49.2
Aqoxy16s008 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 3.8e-124 449.1 280 78.9
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 2.1e-122 443.4 406 51.7
CBR_g8395 Chara braunii HOM05D003289 ORTHO05D004594 1.4e-118 430.6 294 68.7
CARHR038410 Cardamine hirsuta HOM05D003289 ORTHO05D004594 2.0e-117 426.8 316 67.1
HanXRQChr09g0249461 Helianthus annuus HOM05D003289 ORTHO05D004594 5.7e-112 408.7 242 79.3
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 1.8e-105 387.1 412 45.4
MBI15_g40425_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 8.2e-103 378.3 280 68.9
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 7.7e-101 371.7 259 70.7
QL02p053680 Quercus lobata HOM05D003289 ORTHO05D004594 3.1e-70 270.0 156 82.1
QL12p004084 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-68 264.6 167 77.2
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 1.5e-67 261.2 143 80.4
QL93p0107_0380 Quercus lobata HOM05D000370 ORTHO05D001335 7.2e-67 258.8 167 75.4
QL07p004315 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-66 257.7 167 74.9
Zm00001eb179700 Zea mays HOM05D003289 ORTHO05D004594 9.8e-64 248.4 142 75.4
MBI15_g40424_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 2.1e-58 230.7 143 72.7
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 2.4e-54 217.2 167 68.3
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 2.0e-48 197.6 104 82.7
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 9.2e-46 188.7 181 55.8
Gohir.D05G085450 Gossypium hirsutum HOM05D003289 ORTHO05D004594 4.6e-45 186.4 132 72.0
Cpa.g.sc32.135 Carica papaya HOM05D003289 ORTHO05D004594 5.6e-43 179.5 139 64.7
FAN25G3673 Fragaria x ananassa HOM05D003289 ORTHO05D004594 3.4e-40 170.2 145 63.4
CARHR038400 Cardamine hirsuta HOM05D003289 ORTHO05D004594 7.1e-38 162.5 159 53.5
Aa31LG1G200 Aethionema arabicum HOM05D003289 ORTHO05D004594 9.2e-38 162.2 105 75.2
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 3.2e-30 137.1 70 88.6
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 8.7e-28 129.0 75 72.0
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 5.6e-27 126.3 75 70.7
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 2.4e-25 120.9 162 45.1
Cfa019187 Carpinus fangiana HOM05D003289 ORTHO05D034141 2.0e-16 91.3 51 74.5
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-15 87.8 53 75.5
Zm00001eb135070 Zea mays HOM05D003289 ORTHO05D034141 2.9e-15 87.4 44 79.5
Zm00001eb147670 Zea mays HOM05D003289 ORTHO05D034141 2.9e-15 87.4 44 79.5
QL08p003473 Quercus lobata HOM05D000176 ORTHO05D005465 6.4e-15 86.3 53 73.6
TPR.G328 Trifolium pratense HOM05D003289 ORTHO05D004594 7.6e-08 62.8 34 85.3
BolC5t29400H Brassica oleracea HOM05D003289 ORTHO05D004594 4.9e-07 60.1 35 82.9
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 1.1e-06 58.9 32 87.5


User provided reference genes

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