Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 2.3e-105 385.6 191 100.0
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 4.1e-91 338.2 216 82.9
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 3.9e-57 225.3 196 60.2
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 5.5e-51 204.9 98 98.0
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 1.6e-34 150.2 268 36.6
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 1.8e-33 146.7 260 36.2
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 5.1e-33 145.2 269 38.3
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 8.8e-33 144.4 261 37.9
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 1.5e-32 143.7 267 36.0
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 4.4e-32 142.1 262 38.2
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 1.4e-30 137.1 264 34.5
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 9.1e-30 134.4 261 34.5
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 9.1e-30 134.4 236 35.2
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 2.0e-29 133.3 258 33.7
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 7.7e-29 131.3 188 41.0
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 1.0e-28 131.0 256 34.0
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 1.7e-28 130.2 269 34.6
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 3.8e-28 129.0 265 35.8
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 6.5e-28 128.3 262 32.4
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 8.5e-28 127.9 271 32.8
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 8.5e-28 127.9 244 35.2
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 1.1e-27 127.5 253 35.6
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 5.5e-27 125.2 239 33.5
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 9.4e-27 124.4 234 33.8
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 3.6e-26 122.5 260 33.1
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 4.7e-26 122.1 253 33.6
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 7.9e-26 121.3 267 32.2
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 1.4e-25 120.6 254 33.9
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 5.2e-25 118.6 232 35.3
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 1.5e-24 117.1 266 32.7
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 1.5e-24 117.1 257 31.5
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 2.8e-23 112.8 178 39.9
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 8.2e-23 111.3 261 30.7
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 1.4e-22 110.5 215 34.0
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.8e-22 110.2 253 30.4
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 4.5e-21 105.5 252 30.2
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 3.8e-20 102.4 238 32.8
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 6.5e-20 101.7 210 34.3
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 3.2e-19 99.4 178 38.2
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 3.2e-19 99.4 178 38.2
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 3.2e-19 99.4 178 38.2
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 9.4e-19 97.8 181 37.6
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 9.4e-19 97.8 181 37.6
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 2.1e-18 96.7 89 51.7
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 1.0e-17 94.4 272 28.3
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 1.0e-17 94.4 109 45.0
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 1.8e-17 93.6 97 49.5
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 1.5e-16 90.5 111 48.6
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 7.5e-16 88.2 108 44.4
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 1.3e-15 87.4 189 36.0
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 2.8e-15 86.3 67 59.7
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 4.8e-15 85.5 125 38.4
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 6.3e-15 85.1 112 42.0
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 8.2e-15 84.7 99 44.4
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.1e-14 84.3 66 57.6
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.1e-14 82.4 89 52.8
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 7.7e-13 78.2 187 29.9
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 1.3e-12 77.4 82 45.1
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.9e-12 76.3 60 56.7
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 2.9e-12 76.3 112 40.2
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 5.0e-12 75.5 180 31.7
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.9e-11 73.6 106 42.5
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 7.2e-11 71.6 178 32.0
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 9.4e-11 71.2 110 38.2
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 1.2e-10 70.9 138 34.8
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.2e-10 70.9 59 55.9
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 1.6e-10 70.5 170 31.8
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 1.8e-09 67.0 54 51.9
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 4.0e-09 65.9 71 52.1
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 5.2e-09 65.5 187 28.3
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 1.5e-08 63.9 70 50.0
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 2.2e-07 60.1 106 34.9
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 1.1e-06 57.8 182 28.0


User provided reference genes

Program Settings