Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1881.7 958 100.0
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1863.2 958 99.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1738.4 916 94.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1728.8 960 91.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1701.8 952 91.5
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1663.7 959 87.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1650.2 976 85.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1642.1 963 86.2
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1630.9 961 85.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1585.5 959 83.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1573.1 961 82.1
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1570.4 955 82.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1566.2 916 82.6
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1565.1 963 81.3
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1557.7 962 81.5
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1553.5 958 82.8
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 962 79.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 915 82.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1547.7 954 80.3
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 915 82.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1543.1 953 80.1
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 966 79.5
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 968 79.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 956 78.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1529.2 954 80.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1525.8 953 77.9
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 958 80.8
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 955 79.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 959 79.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 954 78.4
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1520.8 906 84.9
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1519.6 959 79.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 966 79.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 952 77.9
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 955 78.6
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 956 77.9
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 961 79.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1514.6 952 77.6
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1513.4 954 78.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 963 78.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 955 78.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 982 77.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 959 78.9
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 953 79.0
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 915 80.0
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1506.1 960 78.6
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 961 79.1
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1505.0 955 77.9
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1503.4 960 78.4
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1503.0 963 78.0
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1502.6 958 78.3
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1501.5 955 78.6
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1501.5 955 77.4
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 959 77.6
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 959 78.3
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 966 79.5
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1499.2 961 77.6
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 963 77.4
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 955 77.6
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 981 76.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 957 77.7
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 922 80.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 957 77.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 963 77.3
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1497.3 962 78.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 926 77.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 960 77.4
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1493.8 960 77.4
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 967 78.6
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 953 77.3
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 967 77.8
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1484.9 953 77.3
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1475.3 959 77.0
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1474.9 1183 66.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 924 78.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 923 79.7
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 962 75.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 969 76.5
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1466.4 952 76.7
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1454.1 981 73.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 922 76.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 843 82.4
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 966 74.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1434.9 955 75.4
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 958 74.9
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1430.2 965 72.6
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1422.1 965 72.8
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1420.6 968 74.5
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 975 74.1
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1417.9 961 74.8
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 981 73.7
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 981 73.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 831 81.9
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 965 73.6
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1412.9 956 74.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1406.0 966 74.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 952 71.8
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1402.5 962 74.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1396.3 954 73.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 941 73.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1390.9 944 73.2
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1384.4 957 73.0
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 956 69.5
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1371.3 954 70.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1357.8 924 71.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1357.4 966 71.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1338.9 913 70.3
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1320.4 922 70.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1316.2 924 68.4
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1286.9 786 80.7
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1281.9 779 80.6
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1241.1 726 83.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1222.6 922 64.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1206.8 777 73.4
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1177.2 977 63.2
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1166.0 690 83.0
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1136.3 978 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1125.2 981 58.1
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1116.3 956 61.6
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1100.1 962 58.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 7.9e-308 1060.4 722 74.7
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.3e-294 1016.5 661 76.4
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.6e-284 983.0 789 60.7
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 5.9e-271 937.9 629 72.8
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.8e-267 924.5 591 77.7
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-252 876.7 562 77.6
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.7e-230 803.5 525 75.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.2e-223 780.8 600 67.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.1e-207 726.9 503 71.6
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 5.1e-206 722.2 395 85.3
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.7e-183 646.0 386 81.6
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.9e-183 645.2 408 79.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.3e-181 639.8 1042 37.4
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.9e-145 520.4 416 60.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.9e-144 517.7 446 62.1
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 9.8e-141 505.4 825 37.8
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 8.9e-118 429.1 223 89.7
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.6e-117 427.6 402 57.2
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 4.9e-116 423.3 252 79.0
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.9e-112 411.4 1052 28.4
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.3e-104 384.0 279 66.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.9e-101 372.5 839 31.6
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 253 64.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.7e-92 345.1 253 64.8
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.4e-91 342.0 251 66.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 4.6e-90 337.0 365 45.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.5e-82 310.8 246 64.6
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-59 235.7 148 72.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.6e-53 214.9 174 53.4
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 2.7e-50 204.9 149 61.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 2.7e-50 204.9 149 61.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.2e-47 195.3 139 62.6
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.8e-44 184.5 103 85.4
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.4e-43 179.9 118 71.2
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.0e-41 174.9 248 45.6
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 5.7e-40 170.6 145 55.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.0e-38 163.7 99 77.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.6e-37 162.5 141 49.6
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.9e-36 158.3 131 62.6
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-35 156.0 76 92.1
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-35 154.5 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.6e-35 154.1 75 93.3
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.6e-34 152.5 111 66.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-34 151.8 76 89.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-33 147.5 74 90.5
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 6.8e-33 147.1 123 60.2
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.5e-29 134.8 94 70.2
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.9e-29 134.0 88 77.3
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 6.6e-28 130.6 78 80.8
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 8.9e-25 120.2 143 45.5
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.9e-25 120.2 65 84.6
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.0e-24 119.0 113 51.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.9e-22 112.5 124 48.4
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.9e-20 104.8 69 76.8
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 5.2e-17 94.4 263 26.6
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.9e-14 85.9 82 54.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 1.6e-13 82.8 80 58.8
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.7e-12 79.3 56 62.5
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.6e-10 72.8 46 63.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 7.6e-08 63.9 48 58.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.4e-06 59.7 70 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.4e-06 58.9 42 59.5


User provided reference genes

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