Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.7e-41 172.2 81 100.0
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.7e-41 172.2 81 100.0
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.7e-41 172.2 81 100.0
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 3.7e-41 171.0 81 98.8
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 8.3e-41 169.9 81 97.5
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.8e-40 168.7 81 97.5
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 9.1e-40 166.4 81 95.1
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.3e-35 151.8 81 86.4
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 2.3e-35 151.8 81 86.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 4.9e-33 144.1 81 81.5
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.4e-32 141.7 81 76.5
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 76.5
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 1.6e-31 139.0 81 76.5
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 2.0e-31 138.7 81 75.3
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 3.5e-31 137.9 81 76.5
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 77.8
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 4.5e-31 137.5 81 75.3
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 5.9e-31 137.1 81 77.8
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.0e-30 136.3 81 75.3
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.3e-30 136.0 82 78.0
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 1.7e-30 135.6 81 74.1
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.3e-30 135.2 81 77.8
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 72.8
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 76.5
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 3.8e-30 134.4 81 76.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 8.6e-30 133.3 81 72.8
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 75.3
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 72.8
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 70.4
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.9e-29 132.1 81 71.6
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.9e-29 132.1 81 75.3
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.9e-29 132.1 81 74.1
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.5e-29 131.7 81 71.6
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 3.3e-29 131.3 81 69.1
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 5.6e-29 130.6 81 75.3
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 9.5e-29 129.8 81 71.6
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 9.5e-29 129.8 81 70.4
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 2.1e-28 128.6 81 71.6
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 2.8e-28 128.3 81 67.9
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 4.7e-28 127.5 80 70.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 4.7e-28 127.5 81 70.4
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 70.4
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 8.0e-28 126.7 81 69.1
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.0e-27 126.3 81 69.1
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.4e-27 125.9 81 71.6
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.8e-27 125.6 81 70.4
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 69.1
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 67.9
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 2.3e-27 125.2 81 67.9
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 74.1
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 74.1
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 74.1
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 3.0e-27 124.8 81 74.1
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 3.0e-27 124.8 80 68.8
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 67.9
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 69.1
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 69.1
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 5.2e-27 124.0 82 69.5
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 5.2e-27 124.0 80 70.0
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 5.2e-27 124.0 82 70.7
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 74.1
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 5.2e-27 124.0 81 74.1
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 70.4
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 8.9e-27 123.2 81 67.9
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 65.4
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 2.0e-26 122.1 79 69.6
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 72.8
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 70.4
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 66.7
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 67.9
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 65.4
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 2.9e-25 118.2 81 65.4
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 66.7
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 66.7
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 64.2
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 64.2
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 66.7
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 66.7
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 65.4
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 7.0e-24 113.6 81 64.2
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.7e-23 111.7 57 86.0
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 65.4
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 61.7
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 2.3e-22 108.6 81 61.7
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 2.5e-21 105.1 76 61.8
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 3.3e-21 104.8 79 60.8
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 9.5e-21 103.2 79 60.8
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 1.2e-20 102.8 79 58.2
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 2.1e-20 102.1 58 75.9
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 3.1e-19 98.2 78 52.6
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 8.3e-17 90.1 72 52.8
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.9e-16 89.0 63 73.0
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 1.9e-16 89.0 57 66.7
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 4.1e-16 87.8 58 72.4
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 7.0e-16 87.0 70 57.1
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 9.2e-16 86.7 58 72.4
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 1.2e-15 86.3 78 52.6
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 1.6e-15 85.9 81 48.1
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 2.0e-15 85.5 47 83.0
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 2.0e-15 85.5 47 83.0
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 7.3e-13 77.0 80 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.6e-12 75.9 77 48.1
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 2.1e-12 75.5 65 58.5
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.1e-11 73.2 80 45.0
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.0e-10 68.9 77 50.6
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 2.0e-10 68.9 56 51.8
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 4.1e-08 61.2 45 55.6
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 9.2e-08 60.1 42 66.7


User provided reference genes

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