Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.1e-261 906.4 566 100.0
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.1e-247 859.0 574 95.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 9.8e-189 664.1 585 79.3
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.5e-185 651.4 587 79.6
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.2e-154 550.8 599 70.8
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.1e-151 540.0 590 68.8
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.6e-109 398.7 577 46.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 8.5e-108 395.2 585 47.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 8.5e-108 395.2 570 47.5
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.5e-107 392.5 570 47.2
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.5e-107 392.5 577 49.7
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 7.2e-107 392.1 307 90.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.9e-100 370.2 480 60.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-97 359.8 404 56.2
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 6.7e-97 359.0 586 46.8
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.9e-92 343.6 577 44.4
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 3.9e-89 333.2 571 43.8
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 8.8e-89 332.0 475 50.5
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.3e-88 330.1 565 42.8
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 5.7e-88 329.3 596 43.1
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.2e-87 327.4 578 41.0
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.8e-87 327.0 559 44.0
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 4.8e-87 326.2 479 47.2
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.1e-86 325.1 592 40.9
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.2e-85 321.6 591 43.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.6e-85 321.2 581 45.4
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.5e-85 320.1 587 45.0
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 3.5e-85 320.1 606 40.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.0e-84 318.5 563 42.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.0e-84 318.5 586 42.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.9e-84 317.0 598 43.3
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 5.0e-84 316.2 580 42.9
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.5e-83 313.9 498 44.8
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 3.2e-83 313.5 563 44.9
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 3.2e-83 313.5 570 40.9
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.6e-82 311.2 400 50.5
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.0e-81 308.5 506 49.8
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.5e-80 304.7 568 43.3
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.5e-80 304.7 459 45.3
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 3.3e-80 303.5 586 43.2
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 7.5e-80 302.4 495 43.6
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.7e-79 300.1 452 44.5
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 4.8e-79 299.7 497 43.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 6.3e-79 299.3 477 42.6
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.1e-78 297.0 558 40.3
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.1e-78 296.6 502 47.2
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.1e-78 296.6 585 41.5
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 5.3e-78 296.2 592 39.5
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 7.0e-78 295.8 582 39.3
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 1.3e-76 291.6 573 39.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-76 291.6 592 38.5
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 1.7e-76 291.2 592 38.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.7e-76 291.2 573 38.9
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 3.8e-76 290.0 583 38.3
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 1.5e-75 288.1 576 39.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.5e-75 288.1 571 39.4
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.9e-75 287.7 588 37.9
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-74 285.0 480 47.3
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-74 283.9 480 48.3
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 8.8e-73 278.9 576 40.3
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 9.8e-72 275.4 461 46.9
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 9.8e-72 275.4 584 38.9
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.7e-71 274.6 572 38.6
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 3.7e-71 273.5 566 40.8
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.1e-70 270.4 469 44.1
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 4.1e-70 270.0 584 37.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.1e-70 270.0 616 36.4
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.5e-69 266.9 575 37.6
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 1.3e-68 265.0 564 39.5
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.3e-68 265.0 551 40.1
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 4.2e-67 260.0 601 38.1
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.2e-67 260.0 566 37.1
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.2e-67 260.0 585 38.6
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 1.2e-66 258.5 468 40.2
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 1.2e-66 258.5 468 40.2
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.6e-66 256.9 467 42.8
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 4.7e-66 256.5 383 45.2
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 6.8e-65 252.7 382 43.7
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.2e-64 251.9 450 41.1
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.2e-64 251.9 574 38.9
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.4e-64 250.4 584 36.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-63 248.4 610 35.7
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.4e-62 245.0 574 37.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.4e-62 244.2 585 36.9
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.1e-62 243.8 484 43.6
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 7.0e-62 242.7 557 40.8
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 1.6e-61 241.5 470 40.6
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.0e-61 241.1 593 35.2
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 4.5e-61 240.0 413 46.7
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.5e-61 240.0 608 35.9
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.3e-60 237.7 573 36.5
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 4.3e-59 233.4 458 38.6
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 9.5e-59 232.3 463 41.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 9.5e-59 232.3 321 49.5
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.0e-57 226.9 493 39.8
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.0e-57 226.9 579 34.7
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 9.8e-56 222.2 563 38.5
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.4e-54 217.6 391 40.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-51 207.6 322 45.7
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.3e-51 206.8 468 41.9
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.6e-48 197.6 471 42.9
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 9.8e-48 195.7 464 35.3
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.6e-45 188.3 473 38.9
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-43 181.0 480 34.0
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.0e-40 171.4 334 37.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.4e-40 170.6 459 31.8
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 5.4e-38 163.3 475 36.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 7.1e-38 162.9 328 36.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.2e-37 162.2 485 30.1
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 2.3e-36 157.9 477 37.5
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 2.3e-36 157.9 452 36.9
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.3e-36 157.9 305 38.7
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 6.6e-36 156.4 468 32.3
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.9e-35 154.8 469 35.0
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 7.3e-35 152.9 386 36.3
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 1.1e-33 149.1 458 32.3
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 9.9e-32 142.5 453 36.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 4.1e-30 137.1 349 39.8
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 5.4e-30 136.7 346 40.2
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.7e-29 134.4 126 54.8
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.5e-29 134.0 455 34.5
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.7e-28 131.7 469 34.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.1e-27 129.0 195 46.2
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.1e-27 129.0 384 33.1
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.5e-27 128.6 194 53.6
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.9e-27 128.3 219 47.9
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.5e-27 127.9 260 37.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 4.7e-26 123.6 252 36.1
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.4e-25 122.1 469 33.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-25 121.7 388 31.2
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 6.9e-25 119.8 390 30.8
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 2.6e-24 117.9 461 32.5
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.7e-23 115.2 469 28.1
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.8e-23 114.0 296 35.1
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 3.5e-21 107.5 68 76.5
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 4.2e-14 84.0 132 43.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.0e-12 79.3 95 49.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.7e-12 76.3 52 69.2
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 1.6e-10 72.0 163 35.6
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.8e-09 68.6 179 34.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 2.9e-07 61.2 87 42.5
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 4.9e-07 60.5 222 35.6
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 6.4e-07 60.1 79 48.1
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 8.4e-07 59.7 282 27.0
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 4.2e-06 57.4 132 37.1
Mapoly0001s0089 Marchantia polymorpha HOM05D001846 ORTHO05D005785 5.5e-06 57.0 316 25.9


User provided reference genes

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