Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.6e-138 493.8 246 100.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 9.9e-138 493.4 246 99.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.0e-135 484.2 246 97.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.7e-111 405.6 241 83.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.9e-106 387.9 215 87.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.3e-101 371.7 245 79.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.3e-100 370.2 247 75.3
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.9e-99 364.4 246 74.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 6.7e-94 347.8 246 72.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.8e-92 341.7 247 69.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.3e-92 341.3 247 71.3
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.0e-86 323.9 243 69.5
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.0e-86 323.9 247 67.6
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.2e-84 316.2 247 67.6
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-84 315.8 247 67.6
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 6.3e-84 314.7 256 64.1
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 7.0e-83 311.2 247 67.2
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 4.5e-82 308.5 243 65.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.3e-81 307.0 247 66.4
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.8e-81 305.4 244 66.8
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 8.5e-81 304.3 246 64.6
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.9e-80 303.1 252 65.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 3.2e-80 302.4 251 64.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 9.4e-80 300.8 246 63.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 3.6e-79 298.9 256 62.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.0e-78 297.4 215 72.1
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 3.0e-78 295.8 248 63.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.0e-78 295.4 276 58.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.0e-78 295.4 264 62.5
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-77 293.9 249 62.7
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.4e-77 292.4 251 61.8
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.5e-77 291.2 225 68.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.2e-76 289.7 249 62.2
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 3.7e-76 288.9 269 57.6
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 4.8e-76 288.5 249 63.9
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 4.8e-76 288.5 231 67.1
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 1.1e-75 287.3 251 63.7
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.4e-75 286.2 224 68.8
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.4e-75 286.2 237 65.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.1e-75 285.8 249 63.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.4e-75 285.0 224 68.3
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.1e-75 284.3 224 68.3
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.0e-74 283.1 242 66.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.7e-74 282.7 232 65.1
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.5e-74 282.0 211 68.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.3e-73 280.4 253 62.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 5.0e-73 278.5 271 58.7
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 6.5e-73 278.1 213 69.5
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.1e-72 277.3 246 58.9
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-72 276.9 264 56.1
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.5e-72 276.2 276 54.3
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.2e-72 275.8 246 62.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 3.2e-72 275.8 217 66.8
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.2e-72 275.4 245 62.4
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 7.2e-72 274.6 239 61.5
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-71 273.9 251 61.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.6e-71 273.5 251 61.4
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.6e-71 273.5 224 64.7
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 6.1e-71 271.6 243 58.4
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.0e-70 270.8 269 55.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.3e-70 269.6 235 61.3
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 4.0e-70 268.9 250 58.8
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 4.0e-70 268.9 252 61.5
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 5.2e-70 268.5 304 52.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.0e-69 266.5 234 59.8
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.6e-69 266.2 185 73.0
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.7e-68 263.5 210 64.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.8e-68 262.7 218 63.8
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.8e-67 260.0 253 58.1
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.6e-66 256.9 176 74.4
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.0e-66 256.5 244 59.8
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.0e-66 256.5 252 55.6
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 4.5e-66 255.4 206 66.5
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-66 255.4 252 57.1
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 4.5e-66 255.4 255 53.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-65 253.8 252 56.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-65 253.8 222 62.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.7e-65 253.4 252 56.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.7e-65 253.4 236 60.2
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.9e-65 252.7 230 59.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.9e-64 250.0 247 55.5
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.9e-64 250.0 247 55.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.2e-63 247.3 176 71.6
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.6e-63 246.9 253 56.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.6e-63 246.9 206 64.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 4.7e-63 245.4 257 56.8
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 6.1e-63 245.0 256 54.7
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.0e-62 244.2 293 50.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.8e-62 243.4 254 53.1
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 6.8e-62 241.5 205 62.9
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.0e-61 240.0 257 56.0
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.9e-60 236.1 230 58.3
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.7e-60 235.7 237 55.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.7e-60 235.7 224 56.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 3.7e-60 235.7 222 57.2
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.4e-60 235.0 222 59.5
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.2e-58 230.7 234 53.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.2e-58 230.7 260 53.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 7.8e-58 228.0 176 67.0
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-57 227.6 254 53.1
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.0e-57 227.6 210 61.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.7e-57 226.9 230 55.7
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 5.0e-57 225.3 258 53.1
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 6.6e-57 224.9 258 52.7
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-56 224.2 258 52.7
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-56 224.2 258 53.5
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-56 224.2 258 53.5
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.5e-56 223.8 220 57.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.3e-56 222.2 205 57.1
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.2e-55 220.7 248 52.4
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 6.2e-55 218.4 178 67.4
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 7.5e-53 211.5 258 50.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 9.8e-53 211.1 265 49.1
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.7e-52 209.1 257 49.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.9e-52 208.8 255 49.8
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 4.9e-52 208.8 233 53.2
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 6.4e-52 208.4 236 50.8
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 8.3e-52 208.0 191 58.6
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.1e-51 205.7 154 64.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-50 203.4 257 49.4
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.7e-50 203.0 237 49.8
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.6e-50 202.2 199 58.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-49 200.3 230 50.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 3.3e-48 196.1 213 50.2
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.6e-47 193.7 165 59.4
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.7e-47 192.2 149 65.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 4.7e-47 192.2 198 51.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 4.7e-47 192.2 180 59.4
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.4e-46 190.7 201 54.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.5e-45 184.9 204 54.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 8.3e-44 181.4 144 61.1
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.4e-43 180.6 190 50.5
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.9e-43 180.3 117 70.9
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.8e-42 174.9 138 68.1
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 1.3e-41 174.1 199 50.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.7e-41 173.7 178 53.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-39 166.4 259 43.6
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.5e-37 160.6 139 65.5
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 7.6e-37 158.3 139 65.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.2e-35 152.9 139 64.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 7.8e-34 148.3 159 55.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.0e-33 147.9 179 45.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.3e-33 146.7 142 52.8
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.1e-33 145.6 104 69.2
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 9.6e-32 141.4 138 53.6
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.2e-31 138.7 130 60.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 5.2e-30 135.6 132 59.8
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.7e-28 130.6 153 51.0
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.4e-27 127.5 148 56.1
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 1.4e-27 127.5 97 63.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.8e-23 113.2 232 37.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 4.8e-23 112.5 159 41.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 8.1e-23 111.7 63 73.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 1.5e-21 107.5 92 51.1
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.4e-21 106.3 150 51.3
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.3e-20 104.4 117 42.7
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.9e-20 102.4 246 35.4
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.2e-18 97.8 102 54.9
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.3e-17 94.4 102 52.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.1e-17 92.4 68 66.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 5.1e-17 92.4 98 60.2
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.7e-17 92.0 136 48.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 2.4e-14 83.6 87 55.2
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 5.8e-13 79.0 109 42.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.7e-12 77.4 53 58.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.2e-11 72.8 70 51.4
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.2e-11 72.8 82 51.2
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 2.7e-10 70.1 68 52.9
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-08 64.7 50 58.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.8e-07 60.1 59 42.4
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 4.8e-07 59.3 89 42.7
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 8.1e-07 58.5 89 41.6
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.1e-06 58.2 70 44.3
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 5.3e-06 55.8 34 67.6
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 6.9e-06 55.5 59 37.3


User provided reference genes

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