Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-157 558.1 273 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-145 518.8 300 87.7
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-145 518.8 300 87.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-145 518.8 300 87.7
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 3.1e-132 475.3 285 84.6
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 3.1e-132 475.3 285 84.6
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.8e-130 468.4 286 84.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.9e-130 468.0 285 83.5
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.9e-130 468.0 285 83.5
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 8.4e-130 467.2 285 83.5
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 5.5e-129 464.5 285 82.1
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 5.5e-129 464.5 285 82.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.2e-128 463.4 286 83.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.7e-127 457.6 285 82.1
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.3e-126 454.9 285 81.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 5.7e-126 454.5 285 81.4
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-125 453.0 285 81.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-125 453.0 285 81.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-125 453.0 285 81.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-125 453.0 285 81.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.8e-125 452.2 293 78.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.8e-125 451.4 285 81.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.8e-125 451.4 285 81.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-124 449.5 285 80.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 9.0e-124 447.2 285 80.0
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.4e-123 445.3 285 79.6
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.9e-122 442.2 297 78.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.6e-120 436.4 285 78.9
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.7e-120 435.6 285 78.6
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.0e-119 432.2 271 81.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.9e-119 431.8 285 77.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 8.8e-119 430.6 286 76.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.4e-118 427.6 265 81.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.2e-117 426.0 287 76.0
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-116 421.8 263 82.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.1e-116 421.8 288 78.1
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 6.9e-116 421.0 292 76.4
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 9.1e-116 420.6 259 82.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-112 408.7 268 78.0
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 8.8e-111 404.1 304 72.4
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.8e-109 399.1 262 78.6
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-108 394.8 271 76.0
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 5.0e-106 388.3 271 74.2
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-98 363.6 243 77.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.5e-97 359.4 216 82.9
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-97 358.2 244 78.7
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-97 358.2 244 78.7
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.0e-96 354.4 261 74.7
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.2e-94 350.5 216 81.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.8e-93 345.9 260 70.4
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 8.3e-93 344.4 259 70.3
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 6.5e-90 334.7 259 68.0
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.6e-88 328.9 285 65.6
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-87 326.6 273 64.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-85 320.1 204 78.4
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-83 313.9 212 76.9
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 7.7e-83 311.2 210 77.1
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 9.5e-81 304.3 194 79.9
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 9.5e-81 304.3 194 79.9
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 9.5e-81 304.3 194 79.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.4e-78 295.8 187 80.2
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.8e-77 292.7 187 79.7
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-76 290.4 285 57.5
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-72 276.2 252 62.3
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.2e-69 266.5 204 68.1
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 8.3e-69 264.6 184 74.5
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 8.3e-69 264.6 176 76.1
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.4e-68 261.9 149 86.6
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 5.4e-68 261.9 237 61.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 2.0e-67 260.0 183 73.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.5e-65 253.8 176 73.9
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.2e-64 248.4 236 59.3
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.1e-63 247.7 159 79.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.8e-63 246.9 237 58.2
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 3.1e-63 246.1 175 72.0
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.5e-62 241.5 238 57.6
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.3e-61 238.0 128 91.4
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.4e-60 237.3 126 92.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.4e-60 236.5 120 96.7
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.6e-58 228.4 258 53.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 8.6e-58 228.0 258 53.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-56 222.6 182 64.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-54 217.2 144 74.3
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.0e-54 216.9 163 71.2
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-53 213.8 112 91.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.7e-53 213.8 120 89.2
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.4e-52 209.9 114 93.9
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 4.6e-51 205.7 129 83.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.1e-48 196.8 184 60.3
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.1e-48 196.8 184 60.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.9e-45 186.4 110 88.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.9e-45 186.4 283 44.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-44 183.3 126 76.2
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-42 177.9 101 86.1
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.3e-42 177.6 97 92.8
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 5.1e-42 175.6 94 94.7
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-41 174.1 110 81.8
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.6e-40 169.5 116 74.1
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 4.8e-40 169.1 89 92.1
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.1e-39 167.9 89 92.1
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-39 167.9 89 92.1
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-39 167.9 89 92.1
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-39 167.9 184 56.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 3.1e-39 166.4 89 91.0
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 4.0e-39 166.0 89 91.0
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.9e-39 165.2 89 89.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-38 163.3 110 77.3
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 6.4e-37 158.7 91 86.8
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-34 151.0 79 93.7
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 8.1e-32 141.7 101 75.2
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 3.1e-31 139.8 137 57.7
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-29 134.4 76 82.9
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 2.2e-29 133.7 63 98.4
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.9e-28 130.6 66 93.9
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 2.4e-28 130.2 204 41.7
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-25 120.9 66 87.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.9e-21 106.7 169 40.2
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.2e-20 102.8 64 71.9
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.0e-18 96.7 58 79.3
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.8e-15 87.4 120 47.5
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.4e-15 87.0 51 84.3
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 5.3e-15 85.9 43 81.4
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 2.6e-14 83.6 44 88.6
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.7e-13 80.9 48 91.7
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.8e-13 79.7 110 45.5
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 5.5e-12 75.9 36 97.2
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 2.1e-11 73.9 44 68.2
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 4.6e-11 72.8 172 34.9
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 6.1e-11 72.4 34 97.1
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 6.1e-11 72.4 60 66.7
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-09 68.2 167 34.1
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-09 68.2 45 77.8
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.5e-09 67.0 54 61.1
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.8e-08 62.8 119 36.1
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.9e-07 58.9 29 93.1
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 9.0e-07 58.5 83 39.8
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-06 58.2 37 67.6
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-06 57.4 27 96.3
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 2.6e-06 57.0 30 83.3
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.4e-06 56.6 29 86.2


User provided reference genes

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