Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 6.3e-166 587.4 305 100.0
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 1.4e-157 559.7 297 98.0
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 6.7e-144 514.2 297 90.2
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.6e-140 503.1 296 88.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.7e-139 499.6 299 88.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.6e-137 493.0 297 88.2
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 2.4e-109 399.4 297 69.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 3.3e-106 389.0 297 66.7
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 7.3e-106 387.9 297 68.0
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 1.8e-104 383.3 292 66.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 2.6e-103 379.4 285 67.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.7e-102 376.7 285 67.7
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 2.4e-101 372.9 287 65.5
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 4.1e-101 372.1 297 65.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 5.4e-101 371.7 286 66.1
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 9.2e-101 370.9 297 65.0
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.2e-100 370.5 284 65.8
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 2.0e-100 369.8 297 64.0
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 6.0e-100 368.2 287 65.2
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 7.8e-100 367.9 282 66.0
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 1.3e-99 367.1 280 65.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 1.3e-99 367.1 297 66.3
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 3.0e-99 365.9 275 66.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 6.6e-99 364.8 297 63.3
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 1.1e-98 364.0 297 63.0
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 1.1e-98 364.0 294 62.9
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 1.5e-98 363.6 285 64.9
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 1.5e-98 363.6 281 65.8
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 1.9e-98 363.2 282 65.2
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 3.3e-98 362.5 297 64.3
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 5.6e-98 361.7 279 64.5
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 7.3e-98 361.3 276 65.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 7.3e-98 361.3 287 63.4
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 1.2e-97 360.5 297 63.3
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 3.6e-97 359.0 297 64.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 4.7e-97 358.6 297 60.6
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 8.1e-97 357.8 297 62.3
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 1.4e-96 357.1 297 63.3
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 2.3e-96 356.3 297 62.0
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 5.2e-96 355.1 297 62.0
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 5.2e-96 355.1 277 63.5
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 5.2e-96 355.1 282 63.1
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 1.5e-95 353.6 317 60.3
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 4.4e-95 352.1 297 61.3
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 7.5e-95 351.3 287 62.4
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.3e-94 350.5 297 61.3
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 2.2e-94 349.7 285 60.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 6.4e-94 348.2 297 60.6
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 6.4e-94 348.2 297 61.6
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 8.3e-94 347.8 287 61.3
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 1.4e-93 347.1 285 62.1
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 1.9e-93 346.7 282 64.5
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 3.2e-93 345.9 285 61.8
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 7.1e-93 344.7 282 62.4
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 1.6e-92 343.6 278 62.9
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 2.1e-92 343.2 310 59.7
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 2.7e-92 342.8 276 62.3
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 3.5e-92 342.4 287 61.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 3.5e-92 342.4 297 59.3
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 6.0e-92 341.7 297 61.6
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.0e-91 340.9 278 61.9
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 1.3e-91 340.5 287 64.1
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 3.0e-91 339.3 297 59.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 3.9e-91 339.0 285 61.1
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 5.1e-91 338.6 293 59.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 6.6e-91 338.2 286 60.8
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 8.6e-91 337.8 293 59.0
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 1.1e-90 337.4 286 60.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.9e-90 336.7 278 61.9
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 2.5e-90 336.3 297 58.9
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 5.6e-90 335.1 276 61.6
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 7.3e-90 334.7 297 58.2
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 9.5e-90 334.3 295 60.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 2.8e-89 332.8 284 59.9
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 6.2e-89 331.6 284 59.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 1.2e-87 327.4 299 57.9
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 1.5e-87 327.0 294 58.2
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 1.7e-86 323.6 294 57.5
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 8.4e-86 321.2 286 55.9
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.5e-84 315.8 277 59.6
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 6.0e-84 315.1 323 53.9
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 6.0e-84 315.1 323 53.9
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.2e-81 307.4 299 56.9
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 8.1e-81 304.7 297 51.9
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 8.4e-78 294.7 275 55.3
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 5.4e-77 292.0 289 54.7
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 3.4e-71 272.7 204 70.1
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-69 267.3 283 49.8
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 4.0e-64 249.2 227 58.6
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.5e-63 247.3 278 48.2
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 2.7e-60 236.5 273 46.2
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 3.1e-56 223.0 283 42.4
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 1.7e-54 217.2 278 42.4
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 1.7e-54 217.2 261 46.7
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 2.1e-52 210.3 283 42.0
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 4.3e-50 202.6 286 40.9
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 4.8e-49 199.1 207 52.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.1e-48 198.0 179 54.7
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.1e-48 196.4 162 59.9
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.1e-48 196.1 145 69.0
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 8.2e-41 171.8 144 62.5
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 9.1e-40 168.3 292 38.0
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 4.2e-37 159.5 298 38.6
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-26 124.8 141 46.8
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.5e-26 124.4 332 28.9
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.2e-21 106.7 131 48.1
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.6e-20 104.4 310 30.3
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-18 98.2 84 53.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.3e-17 94.7 75 58.7
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.1e-16 89.7 80 61.2
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 4.0e-11 73.2 60 56.7
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.2e-07 61.6 78 47.4
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 4.5e-07 59.7 87 47.1


User provided reference genes

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