Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 2701.4 1398 100.0
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2586.6 1377 97.7
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2472.2 1378 92.4
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 2360.1 1328 91.7
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2292.7 1351 88.2
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2011.9 1353 75.3
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1999.6 1358 73.2
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1980.3 1353 72.9
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1979.1 1339 74.2
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 1942.9 1359 72.3
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1934.1 1379 70.6
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1932.9 1377 71.0
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1925.6 1354 71.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 1923.3 1355 71.9
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 1923.3 1355 71.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1919.1 1345 71.2
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 1918.3 1355 71.8
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1917.1 1347 71.3
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 1909.8 1355 71.1
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 1906.7 1408 69.2
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 1904.8 1356 70.7
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 1900.2 1355 71.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 1899.4 1355 70.5
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1899.4 1355 71.0
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1897.5 1354 72.4
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1897.5 1355 70.3
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1893.2 1355 70.5
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1889.4 1355 70.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 1887.1 1382 69.2
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 1885.2 1355 70.1
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 1882.1 1355 70.4
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1881.7 1355 70.0
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 1865.9 1354 69.1
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1864.0 1353 70.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1858.2 1353 69.8
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1856.3 1355 69.6
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1854.3 1397 69.5
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1853.2 1350 69.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1849.3 1355 68.7
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1846.6 1338 69.4
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1841.6 1327 70.0
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1840.5 1354 68.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1837.0 1348 69.1
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1832.4 1357 68.5
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1831.2 1354 68.8
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1829.3 1355 67.2
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1825.8 1355 68.0
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1823.9 1357 67.9
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1823.5 1340 68.7
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1822.4 1333 69.8
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1818.9 1362 67.0
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1818.5 1365 67.0
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1817.0 1341 69.0
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1814.3 1456 65.6
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1813.9 1341 68.9
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1813.5 1339 68.5
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1810.8 1303 70.7
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1806.6 1354 67.1
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1805.8 1356 66.4
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1803.5 1356 67.8
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1798.5 1353 67.8
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1789.2 1353 66.5
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1787.3 1353 66.4
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1786.5 1353 66.1
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1782.3 1353 67.5
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1781.9 1369 66.0
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1780.0 1353 65.9
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1777.3 1507 61.4
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1776.5 1361 65.9
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1774.2 1358 66.1
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1773.8 1342 66.4
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1772.3 1346 67.4
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1769.6 1379 66.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1765.4 1355 65.4
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1765.0 1218 73.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1750.3 1355 66.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1724.5 1371 64.2
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1721.1 1906 51.7
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1717.2 1371 64.0
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1711.0 1220 70.7
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1690.2 1341 64.1
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1656.0 1334 61.8
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1630.5 911 92.4
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1548.9 1127 69.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1536.5 1152 69.7
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1503.0 1137 68.6
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1390.9 1230 59.5
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1366.3 983 70.1
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1320.1 1395 49.7
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1318.5 1404 50.5
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1294.6 1407 49.0
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1262.3 1335 49.8
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1255.0 956 69.0
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1144.8 1053 57.3
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.1e-294 1017.3 727 67.7
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 1.4e-292 1010.4 1069 53.9
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-286 990.7 886 58.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 7.3e-286 988.0 829 59.8
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.3e-229 801.2 1427 35.8
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 8.2e-229 798.5 1287 36.6
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 8.8e-207 725.3 600 63.3
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 2.0e-203 714.1 1408 33.7
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.7e-195 687.2 510 68.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.3e-183 647.5 461 69.8
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 7.8e-179 632.5 627 53.6
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.0e-154 552.4 451 64.5
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.1e-148 532.3 347 76.7
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 6.2e-136 490.0 1614 26.4
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 3.0e-130 471.1 315 72.4
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.2e-107 396.0 387 52.5
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 5.7e-105 387.1 1441 24.8
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.8e-74 285.8 161 83.2
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-71 276.6 232 59.5
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 5.0e-61 241.1 167 68.9
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 8.6e-61 240.4 475 34.5
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 4.3e-60 238.0 170 68.8
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 7.8e-54 217.2 168 68.5
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.9e-45 188.3 153 60.1
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.9e-45 188.3 159 64.2
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.5e-44 186.4 165 55.2
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 2.0e-41 176.0 183 54.6
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 4.4e-41 174.9 130 69.2
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 1.3e-40 173.3 183 54.1
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 3.4e-33 148.7 167 50.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.9e-31 142.9 258 36.4
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.3e-27 130.2 115 59.1
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.6e-27 129.8 98 64.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 4.8e-27 128.3 149 47.0
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 4.0e-26 125.2 76 77.6
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.0e-26 124.0 168 42.9
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 7.6e-25 120.9 78 78.2
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.9e-24 119.0 88 67.0
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 4.6e-22 111.7 73 74.0
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.6e-19 103.2 192 29.7
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 6.2e-19 101.3 92 56.5
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.5e-17 96.7 81 56.8
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.9e-16 91.7 77 54.5
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 1.6e-14 86.7 118 41.5
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.5e-14 85.5 55 70.9
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.5e-08 64.7 117 35.9
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 7.9e-06 57.8 137 31.4


User provided reference genes

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