Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.4e-62 242.7 117 100.0
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.4e-62 242.7 117 100.0
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.4e-62 242.7 117 100.0
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.9e-60 234.6 117 95.7
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.3e-59 231.5 117 94.0
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.8e-58 228.4 117 93.2
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 4.8e-58 227.6 117 92.3
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.6e-56 222.6 116 88.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.0e-55 217.6 116 88.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 6.5e-55 217.2 117 87.2
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.9e-54 215.7 116 86.2
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 2.5e-54 215.3 115 87.0
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 4.2e-54 214.5 117 83.8
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 87.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 7.2e-54 213.8 114 85.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.2e-53 213.0 116 84.5
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.6e-53 212.6 115 87.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.6e-53 212.6 114 85.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.1e-53 212.2 113 87.6
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 86.1
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.7e-53 211.8 115 87.0
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.6e-53 211.5 117 82.1
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.6e-53 211.5 114 84.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.6e-53 211.5 117 85.5
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 85.3
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 85.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.0e-52 209.9 114 86.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.0e-52 209.9 116 84.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.0e-52 209.9 115 85.2
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.4e-52 209.5 116 86.2
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 84.3
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.0e-52 208.4 115 84.3
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 82.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.0e-52 208.4 115 83.5
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 83.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 6.7e-52 207.2 114 83.3
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 6.7e-52 207.2 116 83.6
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 83.6
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 83.6
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.2e-51 206.5 117 80.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 81.9
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 82.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 82.1
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 82.1
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 82.1
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-51 205.7 117 83.8
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.0e-51 205.7 116 84.5
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 3.3e-51 204.9 116 82.8
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.3e-51 204.9 117 82.9
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 3.3e-51 204.9 116 84.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.3e-51 204.9 116 81.9
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 3.3e-51 204.9 115 82.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 80.3
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 5.7e-51 204.1 114 83.3
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 5.7e-51 204.1 118 83.9
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 81.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 81.0
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 82.8
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 81.9
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.8e-50 201.8 115 82.6
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 3.7e-50 201.4 116 81.0
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.7e-50 201.4 115 80.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.4e-49 199.5 114 84.2
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 118 78.8
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 81.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.4e-49 198.7 127 75.6
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.4e-49 198.7 116 81.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 79.3
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 5.3e-49 197.6 116 79.3
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 5.3e-49 197.6 116 80.2
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 5.3e-49 197.6 112 80.4
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 7.0e-49 197.2 119 80.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 7.0e-49 197.2 119 80.7
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 7.0e-49 197.2 117 78.6
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.2e-48 196.4 121 76.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-48 196.1 114 82.5
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.7e-48 195.3 119 80.7
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 82.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 5.9e-48 194.1 116 78.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 5.9e-48 194.1 116 78.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 5.9e-48 194.1 116 78.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 5.9e-48 194.1 116 78.4
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 5.9e-48 194.1 113 81.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.9e-48 194.1 102 90.2
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.0e-47 193.4 116 75.9
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.3e-47 193.0 116 78.4
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 77.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 77.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 78.4
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 78.4
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 78.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.9e-47 191.8 114 78.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.8e-47 191.4 113 79.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 5.0e-47 191.0 116 76.7
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 76.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 5.0e-47 191.0 116 76.7
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 5.0e-47 191.0 117 79.5
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.5e-47 190.7 114 77.2
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.5e-46 188.7 115 76.5
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 115 75.7
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 115 75.7
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.5e-46 188.7 167 58.7
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.2e-46 188.0 116 75.0
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 4.2e-46 188.0 115 73.9
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 4.2e-46 188.0 116 75.0
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.6e-45 186.0 126 71.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 3.6e-45 184.9 117 70.1
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.8e-44 182.6 116 74.1
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.8e-44 182.6 121 76.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.0e-44 181.4 115 72.2
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-43 179.5 117 76.1
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.4e-43 178.3 117 72.6
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 7.5e-43 177.2 116 73.3
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.4e-41 172.9 132 65.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.8e-41 172.6 115 71.3
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.2e-40 169.9 97 83.5
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.0e-40 169.1 98 81.6
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.0e-40 169.1 98 81.6
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.7e-40 168.7 100 81.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.0e-39 166.8 97 80.4
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.0e-39 164.5 96 79.2
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.9e-38 162.5 119 70.6
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 8.0e-37 157.1 101 72.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.5e-35 152.9 116 59.5
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.0e-35 152.5 97 77.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 2.0e-35 152.5 111 59.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.3e-34 149.8 98 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.3e-34 149.8 114 59.6
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 3.5e-32 141.7 95 72.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.5e-30 136.3 116 53.4
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 9.5e-30 133.7 95 70.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 6.4e-26 120.9 116 54.3
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 9.2e-25 117.1 78 70.5
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.0e-24 115.9 65 83.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.7e-23 112.8 64 81.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.3e-23 112.5 66 83.3
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 8.6e-23 110.5 64 82.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-22 110.2 71 80.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-22 109.8 60 85.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.5e-22 109.0 64 78.1
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.6e-21 106.3 58 82.8
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 8.0e-21 104.0 61 78.7
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 8.0e-21 104.0 54 85.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 4.0e-20 101.7 51 90.2
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.2e-20 101.3 52 86.5
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 5.2e-20 101.3 158 41.1
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 5.2e-20 101.3 82 61.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.5e-19 99.8 52 86.5
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 2.6e-19 99.0 133 42.9
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 4.4e-19 98.2 50 88.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.2e-18 95.9 137 40.1
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 3.7e-18 95.1 50 82.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 5.6e-14 81.3 72 61.1
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 3.4e-11 72.0 50 74.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 6.4e-10 67.8 35 94.3
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 5.1e-07 58.2 100 43.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 2.5e-06 55.8 113 33.6


User provided reference genes

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