Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g050760.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.0e-60 234.2 114 100.0
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.1e-54 214.5 112 93.8
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.7e-53 211.8 113 91.2
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.7e-53 211.8 113 91.2
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.7e-53 211.8 113 91.2
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 5.9e-53 210.7 111 91.9
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 5.9e-53 210.7 111 91.9
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 5.0e-52 207.6 111 91.0
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 5.0e-52 207.6 111 91.0
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 5.0e-52 207.6 111 91.0
Solyc11g021230.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.6e-52 207.2 111 90.1
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.6e-50 202.6 113 86.7
Migut.D01249 Erythranthe guttata HOM05D000533 ORTHO05D002807 6.2e-50 200.7 112 86.6
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 5.2e-49 197.6 113 85.0
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 8.9e-49 196.8 113 83.2
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.2e-48 196.4 111 85.6
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-48 196.4 111 85.6
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 3.4e-48 194.9 113 84.1
Gohir.D05G308833 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.4e-48 194.5 107 85.0
EL10Ac1g02291 Beta vulgaris HOM05D000533 ORTHO05D002807 5.8e-48 194.1 111 83.8
EL10As15g24098 Beta vulgaris HOM05D000533 ORTHO05D002807 5.8e-48 194.1 111 83.8
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.3e-47 193.0 113 83.2
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 4.9e-47 191.0 111 82.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.9e-46 189.1 109 84.4
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.9e-46 189.1 109 84.4
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 4.1e-46 188.0 109 83.5
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 5.4e-46 187.6 105 83.8
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 5.4e-46 187.6 105 83.8
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 5.4e-46 187.6 108 84.3
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC29t60549H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 9.2e-46 186.8 105 83.8
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 9.2e-46 186.8 109 83.5
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 9.2e-46 186.8 113 82.3
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 6.0e-45 184.1 105 81.9
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.0e-44 183.3 109 81.7
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.0e-44 183.3 109 81.7
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-44 183.0 110 77.3
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 1.3e-44 183.0 110 77.3
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.3e-44 182.2 105 82.9
arahy.Tifrunner.gnm1.ann1.RBM67I Arachis hypogaea HOM05D000533 ORTHO05D002807 1.5e-43 179.5 109 79.8
Gohir.A10G063750 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.9e-43 179.1 99 84.8
FAN01G0230 Fragaria x ananassa HOM05D000533 ORTHO05D002807 3.3e-43 178.3 111 78.4
arahy.Tifrunner.gnm1.ann1.U57TMC Arachis hypogaea HOM05D000533 ORTHO05D002807 4.3e-43 177.9 109 78.9
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 8.9e-41 170.2 95 86.3
arahy.Tifrunner.gnm1.ann1.CXW88U Arachis hypogaea HOM05D000533 ORTHO05D002807 1.5e-40 169.5 105 78.1
Nn1g07318 Nelumbo nucifera HOM05D000533 ORTHO05D002807 5.8e-40 167.5 93 86.0
TPR.G31189 Trifolium pratense HOM05D000533 ORTHO05D002807 1.3e-39 166.4 104 78.8
Solyc02g080275.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.4e-39 164.1 90 92.2
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 3.2e-38 161.8 99 83.8
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 3.2e-38 161.8 99 83.8
Lsat_1_v5_gn_8_62921 Lactuca sativa HOM05D000533 ORTHO05D002807 1.0e-36 156.8 91 84.6
MELO3C000179.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.3e-35 151.8 91 80.2
CsaV3_1G022940 Cucumis sativus L. HOM05D000533 ORTHO05D002807 9.5e-35 150.2 85 84.7
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 3.6e-34 148.3 113 66.4
Lsat_1_v5_gn_4_118121 Lactuca sativa HOM05D000533 ORTHO05D002807 4.7e-34 147.9 111 65.8
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 1.1e-33 146.7 109 68.8
Psat1g104920 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-32 142.9 77 87.0
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.9e-30 136.0 110 60.9
Nn1g00560 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.1e-30 134.0 73 87.7
BraSC138t45532Z Brassica rapa HOM05D000533 ORTHO05D002807 2.7e-29 132.1 82 76.8
Nitab4.5_0017884g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.0e-28 130.2 81 79.0
Eucgr.B03250 Eucalyptus grandis HOM05D000533 ORTHO05D002807 4.3e-27 124.8 72 84.7
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 2.8e-26 122.1 102 63.7
Gohir.D11G334101 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.8e-26 122.1 72 80.6
Gohir.1Z049702 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.2e-26 120.9 74 78.4
Nitab4.5_0001313g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.1e-25 120.2 84 71.4
Solyc02g011790.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.4e-22 107.8 109 56.0
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 9.3e-22 107.1 85 63.5
Medtr4g451555 Medicago truncatula HOM05D000533 ORTHO05D002807 4.6e-21 104.8 71 74.6
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 7.8e-21 104.0 82 69.5
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 1.0e-20 103.6 56 85.7
BolC2t10599H Brassica oleracea HOM05D000533 ORTHO05D002807 1.3e-18 96.7 62 75.8
Glyma.18G155550 Glycine max HOM05D000533 ORTHO05D002807 1.3e-18 96.7 64 78.1
arahy.Tifrunner.gnm1.ann1.F0S3GF Arachis hypogaea HOM05D000533 ORTHO05D002807 9.0e-17 90.5 61 73.8
Lalb_Chr07g0191801 Lupinus albus HOM05D000533 ORTHO05D002807 1.5e-16 89.7 61 75.4
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.0e-16 89.4 41 95.1
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 3.4e-16 88.6 83 61.4
Lsat_1_v5_gn_5_174020 Lactuca sativa HOM05D000533 ORTHO05D002807 9.9e-16 87.0 60 68.3
CARHR060450 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.3e-15 86.7 71 63.4
HanXRQChr00c0703g0576931 Helianthus annuus HOM05D000533 ORTHO05D002807 2.9e-15 85.5 76 63.2
arahy.Tifrunner.gnm1.ann1.KIF45B Arachis hypogaea HOM05D000533 ORTHO05D002807 4.9e-15 84.7 42 83.3
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 4.9e-15 84.7 101 41.6
arahy.Tifrunner.gnm1.ann1.9IC8RT Arachis hypogaea HOM05D000533 ORTHO05D002807 2.7e-13 79.0 47 76.6
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 8.7e-12 73.9 36 83.3
Nitab4.5_0001783g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.9e-11 72.8 46 78.3
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 7.4e-11 70.9 107 43.9
BolSC37t60796H Brassica oleracea HOM05D000533 ORTHO05D002807 9.6e-11 70.5 30 96.7
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-10 68.6 51 66.7
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-10 68.6 51 66.7
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-10 68.6 51 66.7
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 3.6e-10 68.6 51 66.7
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.1e-09 67.0 81 45.7
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 5.3e-09 64.7 94 44.7
Mapoly0013s0013 Marchantia polymorpha HOM05D002965 ORTHO05D010183 7.1e-06 54.3 64 43.8


User provided reference genes

Program Settings