Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 2.9e-310 1067.8 560 100.0
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.0e-307 1057.7 560 99.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 6.9e-304 1046.6 560 97.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 3.0e-283 978.0 565 91.5
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.3e-259 898.7 494 94.3
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.9e-253 879.0 540 84.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.8e-251 872.5 538 84.8
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 8.9e-251 870.2 572 80.1
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 5.7e-250 867.5 553 81.9
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 7.5e-250 867.1 534 84.8
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.9e-249 865.1 536 83.6
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.3e-249 863.6 565 80.7
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.4e-248 862.1 534 84.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 3.2e-248 861.7 567 79.9
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 7.0e-248 860.5 527 84.6
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 9.2e-248 860.1 529 83.9
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 9.2e-248 860.1 508 88.2
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.2e-247 859.8 529 83.7
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-247 859.4 536 83.2
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.6e-247 859.4 550 81.3
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.6e-247 859.4 571 79.2
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.0e-247 859.0 523 84.1
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.6e-247 857.8 578 79.4
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.8e-247 857.1 530 84.2
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.0e-246 856.7 588 78.2
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.0e-246 856.7 565 80.2
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.7e-246 855.9 540 83.5
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.3e-246 855.5 518 84.2
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.3e-246 855.5 565 80.0
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 6.6e-246 854.0 564 79.8
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 8.6e-246 853.6 524 84.5
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 1.1e-245 853.2 546 82.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.5e-245 852.8 533 82.7
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.9e-245 852.4 571 78.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 3.3e-245 851.7 521 85.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 4.3e-245 851.3 559 81.0
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.3e-245 851.3 531 83.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 7.3e-245 850.5 521 85.6
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.3e-245 850.5 526 83.7
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 9.5e-245 850.1 547 80.1
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 9.5e-245 850.1 528 84.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.2e-244 849.7 528 84.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.6e-244 849.4 541 81.5
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.1e-244 849.0 504 86.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.8e-244 848.6 543 81.6
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.8e-244 848.6 617 74.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 3.6e-244 848.2 528 83.0
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 4.7e-244 847.8 547 79.9
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.3e-243 845.5 510 84.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.1e-243 845.1 526 83.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 6.8e-243 844.0 528 82.8
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 8.9e-243 843.6 527 82.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 8.9e-243 843.6 527 82.7
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 8.9e-243 843.6 542 79.9
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-242 843.2 538 81.6
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-242 842.4 532 82.1
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.0e-242 842.4 538 81.8
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.4e-242 841.6 531 82.1
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 5.8e-242 840.9 538 81.0
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 5.8e-242 840.9 545 81.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 7.5e-242 840.5 525 82.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 7.5e-242 840.5 531 81.5
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 9.8e-242 840.1 542 80.6
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 9.8e-242 840.1 531 81.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.2e-241 839.0 538 82.0
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 2.2e-241 839.0 515 85.0
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.2e-241 839.0 516 84.5
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 2.9e-241 838.6 533 82.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.9e-241 837.8 560 79.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.9e-241 837.8 516 84.7
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 6.4e-241 837.4 526 82.3
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 8.3e-241 837.0 529 82.8
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.4e-240 835.5 554 78.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.4e-240 835.5 572 76.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.4e-240 835.5 530 82.8
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 7.0e-240 833.9 559 78.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.0e-239 832.4 543 80.1
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.0e-239 832.4 505 84.0
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.7e-238 829.3 528 81.6
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 2.3e-238 828.9 544 79.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.0e-238 828.6 493 86.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 3.0e-238 828.6 526 81.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 8.6e-238 827.0 522 81.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.9e-237 825.9 532 80.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.9e-237 825.9 555 78.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.5e-237 825.5 527 81.2
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.3e-237 824.7 544 77.4
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 9.5e-237 823.5 527 81.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.1e-235 820.1 493 86.0
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.1e-235 818.5 528 80.9
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 6.8e-235 817.4 563 78.3
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.4e-232 809.7 536 80.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.4e-232 808.9 498 83.3
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.2e-232 808.5 522 82.0
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 7.8e-231 803.9 483 86.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.1e-228 793.9 488 84.6
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-224 782.7 506 80.6
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.6e-223 778.1 564 73.0
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 5.1e-222 774.6 493 82.6
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.2e-217 759.2 435 90.1
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-216 756.5 466 83.7
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.0e-214 750.4 566 73.9
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.5e-213 746.5 483 80.5
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.6e-213 743.8 520 74.2
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.8e-211 739.6 437 85.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 4.5e-210 734.9 572 70.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.8e-209 731.9 551 70.1
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 4.9e-209 731.5 458 81.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.9e-208 729.6 437 84.7
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.2e-207 726.9 685 60.7
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.8e-206 723.0 518 72.2
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.8e-204 715.7 436 85.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.1e-203 713.8 514 71.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.5e-194 683.3 472 72.7
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 8.4e-193 677.6 505 68.5
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 3.0e-190 669.1 439 78.8
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 8.5e-185 651.0 397 83.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.6e-183 645.6 420 78.3
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 2.3e-182 642.9 406 82.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.8e-180 636.0 389 84.3
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.8e-180 636.0 427 77.0
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.8e-179 633.3 438 74.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.9e-179 631.3 421 77.2
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.3e-177 627.1 447 75.8
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 8.5e-177 624.4 425 75.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-164 583.9 531 62.1
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.4e-163 580.5 468 68.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-151 540.0 316 86.7
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.3e-150 536.6 504 61.9
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.5e-149 533.9 443 68.2
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 5.2e-142 508.8 315 82.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.8e-135 486.5 354 70.9
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.4e-134 484.2 391 69.1
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.0e-134 483.0 299 82.9
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.0e-133 480.3 259 96.5
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.2e-127 461.1 316 78.5
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.5e-125 454.1 269 85.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.0e-121 439.1 559 45.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-120 438.0 285 80.4
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.2e-91 339.7 484 46.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.8e-79 300.4 185 81.1
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.7e-76 291.2 531 40.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.2e-75 286.6 213 68.5
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.5e-67 260.8 192 71.9
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 4.6e-66 256.5 275 53.5
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 9.4e-59 232.3 144 82.6
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.2e-52 211.1 173 64.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 4.2e-51 206.8 193 57.5
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.6e-48 197.6 126 78.6
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 7.0e-46 189.5 119 80.7
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.8e-36 157.1 102 77.5
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.4e-33 148.7 111 69.4
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.5e-32 145.2 94 72.3
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 8.3e-31 139.4 109 72.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 2.4e-30 137.9 101 76.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-28 130.6 104 67.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 3.6e-26 124.0 78 82.1
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 5.2e-25 120.2 69 87.0
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 7.5e-24 116.3 90 62.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 3.1e-22 110.9 79 70.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 7.8e-21 106.3 70 78.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 3.6e-18 97.4 90 58.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.9e-14 85.1 53 83.0
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 6.0e-13 80.1 58 69.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 3.0e-12 77.8 141 36.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 7.3e-11 73.2 49 73.5
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 6.2e-10 70.1 65 52.3
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 4.4e-08 63.9 93 46.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 4.4e-08 63.9 57 56.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 2.2e-07 61.6 39 82.1


User provided reference genes

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