Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.3e-32 139.8 73 100.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.5e-28 128.3 73 91.8
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.2e-27 125.9 73 89.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-26 122.9 71 90.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-26 122.5 71 88.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.5e-25 119.0 73 82.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.6e-25 118.2 73 79.5
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.6e-25 118.2 72 81.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.7e-25 117.1 73 80.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.8e-25 116.3 73 79.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.2e-24 115.2 73 75.3
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.2e-24 115.2 73 78.1
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.2e-24 115.2 73 79.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-24 115.2 73 76.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.8e-24 114.8 73 78.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-24 114.8 73 79.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.7e-24 114.4 73 80.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.7e-24 114.4 73 76.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 4.9e-24 114.0 73 78.1
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 6.3e-24 113.6 73 76.7
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 6.3e-24 113.6 73 75.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-23 112.8 73 76.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.4e-23 111.7 73 74.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.4e-23 111.7 73 75.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 4.1e-23 110.9 73 72.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.1e-23 110.9 73 76.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.4e-23 110.5 74 78.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.4e-23 110.5 74 78.4
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 7.0e-23 110.2 73 74.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.1e-23 109.8 73 72.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.1e-23 109.8 73 72.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.1e-23 109.8 73 72.6
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.2e-22 109.4 73 71.2
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.2e-22 109.4 74 77.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.6e-22 109.0 73 71.2
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-22 109.0 74 78.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.0e-22 108.6 74 77.0
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.0e-22 108.6 74 78.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.0e-22 108.6 73 72.6
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.0e-22 108.6 73 72.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.0e-22 108.6 73 72.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.0e-22 108.6 73 74.0
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.7e-22 108.2 73 71.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.7e-22 108.2 73 72.6
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.7e-22 108.2 73 71.2
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.7e-22 108.2 73 71.2
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 7.7e-22 106.7 73 69.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.7e-22 106.7 77 72.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.0e-21 106.3 73 71.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.3e-21 105.9 73 71.2
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.3e-21 105.9 74 73.0
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.3e-21 105.1 73 69.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.3e-21 105.1 73 69.9
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.9e-21 104.8 73 69.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.9e-21 104.8 73 69.9
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.8e-21 104.4 73 74.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.8e-21 104.4 73 74.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.8e-21 104.4 73 68.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.8e-21 104.4 73 68.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.0e-21 104.0 74 71.6
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-21 104.0 73 68.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.5e-20 102.4 73 69.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-20 102.1 74 71.6
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.9e-20 102.1 73 67.1
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.5e-20 101.7 70 68.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.3e-20 101.3 91 61.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.5e-20 100.5 70 72.9
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.5e-20 100.5 71 66.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.5e-20 100.5 71 64.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 7.2e-20 100.1 70 72.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.2e-20 100.1 71 64.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.2e-20 100.1 78 66.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.5e-20 99.8 74 68.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 9.5e-20 99.8 73 71.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 9.5e-20 99.8 73 69.9
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 9.5e-20 99.8 73 69.9
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-19 99.4 73 69.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.6e-19 99.0 71 62.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.6e-19 99.0 73 67.1
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.6e-19 99.0 74 70.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.8e-19 98.2 73 67.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.6e-19 97.8 73 65.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.6e-19 97.8 73 68.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 3.6e-19 97.8 76 68.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 8.0e-19 96.7 73 63.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 8.0e-19 96.7 71 62.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.0e-18 96.3 103 53.4
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-18 96.3 74 63.5
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-18 95.9 73 60.3
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-18 95.9 73 63.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.4e-18 95.9 105 53.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.3e-18 95.1 73 68.5
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.0e-18 94.4 71 60.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 5.2e-18 94.0 73 68.5
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 5.2e-18 94.0 73 68.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 6.8e-18 93.6 73 68.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 8.9e-18 93.2 73 67.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.9e-18 93.2 72 63.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.9e-18 93.2 72 63.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 8.9e-18 93.2 73 64.4
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 8.9e-18 93.2 73 63.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-17 92.8 73 60.3
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-17 92.8 73 61.6
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.2e-17 92.8 73 61.6
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-17 92.4 73 67.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.6e-17 91.7 73 64.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-17 91.7 55 85.5
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 3.4e-17 91.3 74 63.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.4e-17 91.3 73 64.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-17 90.9 73 65.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.4e-17 90.9 73 65.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 5.7e-17 90.5 74 63.5
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.8e-17 89.7 73 64.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.2e-16 88.6 73 57.5
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.2e-16 88.6 73 57.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.2e-16 88.6 73 60.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.8e-16 88.2 73 63.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.8e-16 88.2 73 63.0
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 6.3e-16 87.0 73 61.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 8.3e-16 86.7 73 63.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 8.3e-16 86.7 74 59.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-15 85.9 74 59.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-15 85.9 63 66.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-15 85.9 63 66.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.8e-15 85.5 73 60.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.2e-15 84.7 74 58.1
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.2e-15 84.7 74 58.1
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 4.1e-15 84.3 73 61.6
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.1e-15 84.3 73 61.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.1e-15 84.3 73 63.0
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.0e-15 83.6 73 61.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.0e-15 83.6 74 58.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 9.2e-15 83.2 73 61.6
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 9.2e-15 83.2 73 61.6
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 9.2e-15 83.2 73 61.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 9.2e-15 83.2 74 56.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-14 82.8 74 60.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.7e-14 81.6 122 41.8
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.6e-14 80.9 75 58.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-13 79.3 74 58.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.7e-13 79.0 74 56.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 2.9e-13 78.2 42 95.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.9e-12 75.5 75 57.3
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.3e-12 74.7 75 56.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.3e-12 74.7 74 56.8
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.3e-12 74.3 70 45.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-11 71.6 77 58.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.8e-11 71.6 77 58.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.7e-11 70.9 73 46.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 6.1e-11 70.5 77 57.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-10 69.7 77 57.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.0e-10 69.7 77 57.1
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.0e-10 67.8 77 54.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 6.8e-10 67.0 74 47.3
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.2e-09 66.2 69 43.5
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.0e-09 65.5 43 74.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.4e-09 64.7 44 70.5
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.8e-09 63.9 70 44.3
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.2e-08 62.0 57 54.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.2e-08 62.0 73 41.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.1e-07 57.8 66 40.9
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.0e-06 53.9 39 61.5


User provided reference genes

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