Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 3589.7 1829 100.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 3494.9 1825 97.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 2874.7 2019 75.3
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 2367.4 1808 70.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2085.1 1843 60.4
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2027.3 1840 58.2
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1955.3 1833 55.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1943.7 1888 55.7
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1931.0 1861 56.3
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1887.8 1211 80.7
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1884.4 1834 54.1
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1862.4 1853 54.6
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 1859.7 1840 54.3
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 1838.5 1849 54.3
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 1836.6 1868 53.5
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 1835.1 1819 54.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 1833.2 1921 52.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 1832.8 1835 53.2
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 1828.9 1828 53.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1825.8 1804 53.1
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 1824.7 1832 52.7
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 1820.4 1836 52.2
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 1804.3 1825 53.2
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1796.2 1829 52.5
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1796.2 1825 52.7
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 1786.2 1829 52.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1780.0 1829 51.6
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1768.4 1829 52.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 1764.6 1816 52.6
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1758.4 1785 52.6
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1748.0 1825 51.6
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1747.6 1835 51.2
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1741.1 1827 51.4
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1737.6 1087 81.5
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1734.5 1826 51.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1731.8 1922 49.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1705.3 1840 51.2
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1698.3 1836 50.6
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1693.3 1826 49.8
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1692.9 1830 50.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1687.9 1826 49.7
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1683.7 1810 50.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1679.5 1828 50.3
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1672.1 2039 46.3
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1664.4 1918 48.6
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1664.4 1841 49.6
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1656.3 1836 49.9
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1650.6 1823 49.1
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1639.4 1831 49.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1639.4 1825 49.0
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1633.2 1822 48.4
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1615.1 1927 47.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1607.0 1831 48.4
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1599.3 1836 47.7
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1598.9 1840 48.1
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1587.0 1819 48.8
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1585.5 1831 47.8
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1585.5 1820 47.3
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1582.4 1940 46.3
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1579.3 1870 47.6
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1575.8 1821 47.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1573.1 1834 47.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1568.9 1743 49.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1565.8 1810 47.1
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1560.8 1826 47.6
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1555.8 1826 47.3
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1554.7 1821 46.6
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1552.0 1879 47.0
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1538.5 1802 46.8
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1536.2 1831 46.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1535.8 1836 46.6
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1535.0 1834 46.2
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1533.9 1833 46.6
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1517.3 1824 46.9
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1496.9 1860 45.2
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1433.7 2323 40.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1400.6 1826 44.1
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1381.7 1844 43.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1333.9 1837 42.9
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1317.4 1405 52.8
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1265.8 1267 55.1
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1264.6 1396 50.0
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1216.4 1503 46.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1128.2 1390 47.3
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1127.9 1853 38.5
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.6e-302 1042.0 632 83.9
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.3e-286 989.2 1250 46.2
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.1e-256 890.6 728 66.3
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.3e-246 856.7 1900 30.9
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 2.3e-239 833.9 1893 30.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 2.8e-221 773.9 713 57.1
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.9e-218 763.8 1022 42.8
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 4.0e-215 753.4 1908 28.2
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 8.9e-183 646.0 1333 34.5
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.5e-177 628.6 750 46.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.7e-173 614.0 440 66.4
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 5.8e-166 590.1 471 62.8
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 4.9e-165 587.0 746 44.4
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 9.2e-164 582.8 1269 31.0
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 6.2e-144 516.9 523 49.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.9e-141 507.3 704 41.5
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.5e-134 485.7 1765 25.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.5e-133 480.3 798 41.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 9.6e-129 466.5 334 68.3
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.3e-121 441.4 540 46.9
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.5e-118 431.0 334 61.4
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.1e-107 395.6 777 34.6
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 9.1e-103 380.2 419 51.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-101 375.6 608 38.7
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.6e-94 352.8 748 33.4
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 3.5e-94 351.7 391 48.6
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-90 339.3 389 46.5
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.6e-89 335.5 663 35.3
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.3e-76 290.8 193 69.9
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.9e-72 278.9 637 30.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 7.0e-71 274.2 228 58.3
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 2.6e-57 229.2 190 60.5
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 3.4e-49 202.2 479 27.8
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 6.2e-43 181.4 212 47.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-36 160.6 330 34.5
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.3e-36 158.7 138 58.0
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 5.3e-34 151.8 101 71.3
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.0e-33 149.8 349 30.7
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.5e-28 132.9 218 39.4
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 3.7e-27 129.0 68 92.6
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.6e-25 122.9 92 59.8
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 7.9e-22 111.3 155 41.3
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 6.2e-19 101.7 109 49.5
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.9e-18 98.2 215 30.2
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 9.0e-18 97.8 294 27.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.5e-17 97.1 122 41.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.4e-17 95.9 92 52.2
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.0e-16 94.4 114 49.1
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 3.8e-16 92.4 137 40.1
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.9e-15 90.1 86 50.0
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.2e-15 89.4 68 63.2
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 8.7e-13 81.3 113 44.2
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.1e-11 76.6 80 51.2
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 6.3e-11 75.1 106 36.8
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 2.0e-09 70.1 52 55.8
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 2.0e-09 70.1 163 31.9
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 7.6e-09 68.2 167 31.7
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 7.6e-09 68.2 69 47.8
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 7.6e-09 68.2 88 44.3
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 3.2e-07 62.8 121 36.4
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-06 60.8 150 28.7


User provided reference genes

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