Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039760.1 Solanum lycopersicum HOM05D000513 ORTHO05D017819 1.6e-55 219.2 106 100.0
Sopen08g014550 Solanum pennellii HOM05D000513 ORTHO05D017819 1.2e-23 113.2 87 66.7
Sopen08g013170 Solanum pennellii HOM05D000513 ORTHO05D017819 9.5e-21 103.6 79 70.9
Solyc02g088000.3 Solanum lycopersicum HOM05D000513 ORTHO05D005338 2.2e-17 92.4 150 40.0
Sopen02g032740 Solanum pennellii HOM05D000513 ORTHO05D005338 2.2e-17 92.4 150 40.0
PGSC0003DMG400001328 Solanum tuberosum HOM05D000513 ORTHO05D005338 2.2e-17 92.4 150 40.0
CAN.G206.155 Capsicum annuum HOM05D000513 ORTHO05D005338 9.2e-16 87.0 150 36.7
Nitab4.5_0002980g0050 Nicotiana tabacum HOM05D000513 ORTHO05D005338 9.2e-16 87.0 150 38.0
TPR.G8813 Trifolium pratense HOM05D000513 ORTHO05D005338 9.2e-16 87.0 113 44.2
Nitab4.5_0000564g0020 Nicotiana tabacum HOM05D000513 ORTHO05D005338 1.6e-15 86.3 150 38.0
Oeu027855.1 Olea europaea HOM05D000513 ORTHO05D005338 1.3e-14 83.2 150 37.3
Oeu027856.1 Olea europaea HOM05D000513 ORTHO05D005338 1.3e-14 83.2 150 37.3
Solyc10g045450.1 Solanum lycopersicum HOM05D000513 ORTHO05D017819 1.3e-14 83.2 80 55.0
HanXRQChr09g0265221 Helianthus annuus HOM05D000513 ORTHO05D005338 2.3e-14 82.4 150 36.7
Solyc01g056650.1 Solanum lycopersicum HOM05D000513 ORTHO05D017819 3.0e-14 82.0 81 58.0
RcHm_v2.0_Chr2g0168331 Rosa chinensis HOM05D000513 ORTHO05D005338 3.9e-14 81.6 150 35.3
AUR62039808 Chenopodium quinoa HOM05D000513 ORTHO05D005338 5.1e-14 81.3 149 34.9
CANSAT64G2318 Cannabis sativa HOM05D000513 ORTHO05D005338 8.6e-14 80.5 152 36.2
AUR62034405 Chenopodium quinoa HOM05D000513 ORTHO05D005338 8.6e-14 80.5 149 34.2
MELO3C009861.2 Cucumis melo HOM05D000513 ORTHO05D005338 8.6e-14 80.5 150 35.3
ECA232G4228 Erigeron canadensis HOM05D000513 ORTHO05D005338 8.6e-14 80.5 161 36.0
Lj4A110T78 Lonicera japonica HOM05D000513 ORTHO05D005338 1.1e-13 80.1 150 34.7
FvH4_6g48410 Fragaria vesca HOM05D000513 ORTHO05D005338 1.5e-13 79.7 150 36.0
FAN14G5629 Fragaria x ananassa HOM05D000513 ORTHO05D005338 1.5e-13 79.7 150 36.0
Gohir.D09G014100 Gossypium hirsutum HOM05D000513 ORTHO05D005338 1.5e-13 79.7 150 36.0
Gorai.006G016400 Gossypium raimondii HOM05D000513 ORTHO05D005338 1.5e-13 79.7 150 36.0
Carub.0003s0097 Capsella rubella HOM05D000513 ORTHO05D005338 1.9e-13 79.3 151 35.8
COL.COLO4_08442 Corchorus olitorius HOM05D000513 ORTHO05D005338 1.9e-13 79.3 150 36.0
CsaV3_3G041330 Cucumis sativus L. HOM05D000513 ORTHO05D005338 1.9e-13 79.3 151 34.4
Dinv34148 Davidia involucrata HOM05D000513 ORTHO05D005338 1.9e-13 79.3 150 36.7
vmacro18187 Vaccinium macrocarpon HOM05D000513 ORTHO05D005338 1.9e-13 79.3 150 35.3
ClCG10G015190 Citrullus lanatus HOM05D000513 ORTHO05D005338 2.5e-13 79.0 150 35.3
Gohir.A09G015500 Gossypium hirsutum HOM05D000513 ORTHO05D005338 2.5e-13 79.0 150 35.3
Nn1g03400 Nelumbo nucifera HOM05D000513 ORTHO05D017819 2.5e-13 79.0 80 52.5
Dinv33768 Davidia involucrata HOM05D000513 ORTHO05D005338 3.3e-13 78.6 150 35.3
FAN02G2319 Fragaria x ananassa HOM05D000513 ORTHO05D005338 3.3e-13 78.6 150 35.3
Hund15597 Selenicereus undatus HOM05D000513 ORTHO05D005338 3.3e-13 78.6 150 34.7
VMungo1383G0284 Vigna mungo HOM05D000513 ORTHO05D005338 3.3e-13 78.6 150 34.0
FAN09G0920 Fragaria x ananassa HOM05D000513 ORTHO05D005338 4.3e-13 78.2 150 34.7
Cc07_g03430 Coffea canephora HOM05D000513 ORTHO05D005338 5.6e-13 77.8 150 35.3
Gorai.009G348800 Gossypium raimondii HOM05D000513 ORTHO05D005338 5.6e-13 77.8 152 34.9
Prupe.3G266700 Prunus persica HOM05D000513 ORTHO05D005338 5.6e-13 77.8 150 35.3
Sed0017521 Sechium edule HOM05D000513 ORTHO05D005338 5.6e-13 77.8 150 35.3
PGR004G2567 Punica granatum HOM05D000513 ORTHO05D005338 7.3e-13 77.4 150 34.7
SalBow1G3534 Salvia bowleyana HOM05D000513 ORTHO05D005338 7.3e-13 77.4 150 34.7
SalBow1G6141 Salvia bowleyana HOM05D000513 ORTHO05D005338 7.3e-13 77.4 150 34.7
CiPaw.04G016900 Carya illinoinensis HOM05D000513 ORTHO05D005338 9.5e-13 77.0 150 34.7
Phvul.008G036600 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 9.5e-13 77.0 150 33.3
THA.LOC104822355 Tarenaya hassleriana HOM05D000513 ORTHO05D005338 9.5e-13 77.0 150 36.0
Ciclev10011124m.g Citrus clementina HOM05D000513 ORTHO05D005338 1.2e-12 76.6 149 35.6
MD09G1052000 Malus domestica HOM05D000513 ORTHO05D005338 1.2e-12 76.6 150 34.7
Peaxi162Scf00129g00129 Petunia axillaris HOM05D000513 ORTHO05D005338 1.2e-12 76.6 150 34.0
Thecc.04G083300 Theobroma cacao HOM05D000513 ORTHO05D005338 1.2e-12 76.6 150 36.0
AT3G01180 Arabidopsis thaliana HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 35.3
BcaC05g30487 Brassica carinata HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 35.3
C09p75370 Brassica napus HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 35.3
Cfa007565 Carpinus fangiana HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 34.7
Thhalv10020091m.g Eutrema salsugineum HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 35.3
MD00G1130900 Malus domestica HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 34.7
Rhsim08G0070300 Rhododendron simsii HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 34.0
Sp3g00920 Schrenkiella parvula HOM05D000513 ORTHO05D005338 1.6e-12 76.3 150 35.3
Ah.10g031590 Amaranthus hybridus HOM05D000513 ORTHO05D005338 2.1e-12 75.9 147 34.0
AL3G11070 Arabidopsis lyrata HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 35.3
A05p44780 Brassica napus HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 35.3
BolC5t35123H Brassica oleracea HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 35.3
BraA05t23179Z Brassica rapa HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 35.3
CSS0032498 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 34.7
CSS0035890 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 34.7
CARHR075860 Cardamine hirsuta HOM05D000513 ORTHO05D005338 2.1e-12 75.9 150 35.3
Haze_14520 Corylus avellana HOM05D000513 ORTHO05D005338 2.8e-12 75.5 150 34.7
Nn1g04753 Nelumbo nucifera HOM05D000513 ORTHO05D005338 2.8e-12 75.5 67 55.2
Potri.017G084100 Populus trichocarpa HOM05D000513 ORTHO05D005338 2.8e-12 75.5 150 35.3
GSVIVG01011429001 Vitis vinifera HOM05D000513 ORTHO05D005338 2.8e-12 75.5 148 35.1
Actinidia38766 Actinidia chinensis HOM05D000513 ORTHO05D005338 3.6e-12 75.1 150 35.3
Actinidia38784 Actinidia chinensis HOM05D000513 ORTHO05D005338 3.6e-12 75.1 150 35.3
CSS0041358 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 3.6e-12 75.1 150 34.7
Duzib187G1959 Durio zibethinus HOM05D000513 ORTHO05D005338 3.6e-12 75.1 149 34.9
Migut.H00928 Erythranthe guttata HOM05D000513 ORTHO05D005338 3.6e-12 75.1 150 33.3
ATR0564G338 Amborella trichopoda HOM05D000513 ORTHO05D005338 4.7e-12 74.7 150 34.7
CiPaw.03G025800 Carya illinoinensis HOM05D000513 ORTHO05D005338 4.7e-12 74.7 161 32.9
Gohir.A07G205600 Gossypium hirsutum HOM05D000513 ORTHO05D005338 4.7e-12 74.7 150 35.3
Gohir.D07G211700 Gossypium hirsutum HOM05D000513 ORTHO05D005338 4.7e-12 74.7 150 35.3
Gorai.001G239200 Gossypium raimondii HOM05D000513 ORTHO05D005338 4.7e-12 74.7 150 35.3
Lj2g0016593 Lotus japonicus HOM05D000513 ORTHO05D005338 4.7e-12 74.7 150 34.7
DCAR_005562 Daucus carota HOM05D000513 ORTHO05D005338 6.2e-12 74.3 150 34.0
Duzib147G1357 Durio zibethinus HOM05D000513 ORTHO05D005338 6.2e-12 74.3 150 34.7
arahy.Tifrunner.gnm1.ann1.UUZ1A7 Arachis hypogaea HOM05D000513 ORTHO05D005338 8.1e-12 73.9 150 33.3
Sabra17G0074200 Salix brachista HOM05D000513 ORTHO05D005338 8.1e-12 73.9 150 35.3
TAR374G1602 Trochodendron aralioides HOM05D000513 ORTHO05D005338 8.1e-12 73.9 178 32.6
Cpa.g.c36490 Carica papaya HOM05D000513 ORTHO05D005338 1.1e-11 73.6 150 34.0
Ca_04285_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 1.1e-11 73.6 150 34.0
Ca_29846_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 1.1e-11 73.6 150 34.0
Glyma.19G022900 Glycine max HOM05D000513 ORTHO05D005338 1.1e-11 73.6 149 32.9
PSO013G0263 Papaver somniferum HOM05D000513 ORTHO05D005338 1.1e-11 73.6 150 32.7
PSO832G4046 Papaver somniferum HOM05D000513 ORTHO05D005338 1.1e-11 73.6 150 32.7
Glyma.13G062700 Glycine max HOM05D000513 ORTHO05D005338 1.4e-11 73.2 149 32.9
Atru.chr8.178 Acer truncatum HOM05D000513 ORTHO05D005338 1.8e-11 72.8 150 34.0
Aa31LG5G12440 Aethionema arabicum HOM05D000513 ORTHO05D005338 1.8e-11 72.8 150 34.0
Aqoxy3G03405 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 1.8e-11 72.8 151 33.1
Aqoxy3G03409 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 1.8e-11 72.8 151 33.1
Lalb_Chr21g0318691 Lupinus albus HOM05D000513 ORTHO05D005338 1.8e-11 72.8 150 33.3
Nn3g17255 Nelumbo nucifera HOM05D000513 ORTHO05D005338 1.8e-11 72.8 150 34.0
MSTRG.3241 Avicennia marina HOM05D000513 ORTHO05D005338 2.3e-11 72.4 150 33.3
Cfa007563 Carpinus fangiana HOM05D000513 ORTHO05D005338 2.3e-11 72.4 150 34.0
TWI32G0103 Tripterygium wilfordii HOM05D000513 ORTHO05D005338 2.3e-11 72.4 150 33.3
TAR622G0870 Trochodendron aralioides HOM05D000513 ORTHO05D005338 2.3e-11 72.4 150 34.7
CDE02G4400 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 3.1e-11 72.0 150 32.7
HanXRQChr14g0449751 Helianthus annuus HOM05D000513 ORTHO05D005338 3.1e-11 72.0 150 32.0
arahy.Tifrunner.gnm1.ann1.27CGVJ Arachis hypogaea HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 32.0
arahy.Tifrunner.gnm1.ann1.9G3TAM Arachis hypogaea HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 32.0
BcaC09g47673 Brassica carinata HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 34.0
BNapus_Darmor_BZH_scaffold_97p00120 Brassica napus HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 34.0
BolC1t05933H Brassica oleracea HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 34.0
Eucgr.J01349 Eucalyptus grandis HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 32.7
Sc10g0003570 Simmondsia chinensis HOM05D000513 ORTHO05D005338 4.0e-11 71.6 150 32.7
ECA238G0428 Erigeron canadensis HOM05D000513 ORTHO05D005338 5.2e-11 71.2 150 34.0
Lj1g0028208 Lotus japonicus HOM05D000513 ORTHO05D005338 5.2e-11 71.2 150 34.0
MBI05_g34358_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 5.2e-11 71.2 162 33.3
MBI02_g15396_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 6.8e-11 70.9 150 32.7
EL10Ac2g02984 Beta vulgaris HOM05D000513 ORTHO05D005338 8.9e-11 70.5 148 31.1
Solyc01g016660.1 Solanum lycopersicum HOM05D000513 ORTHO05D017819 8.9e-11 70.5 56 67.9
Manes.02G046733 Manihot esculenta HOM05D000513 ORTHO05D005338 1.2e-10 70.1 150 32.7
Medtr6g012380 Medicago truncatula HOM05D000513 ORTHO05D005338 1.2e-10 70.1 148 33.1
CDE09G0475 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 1.5e-10 69.7 150 32.7
Manes.01G091700 Manihot esculenta HOM05D000513 ORTHO05D005338 1.5e-10 69.7 150 34.0
Sed0000175 Sechium edule HOM05D000513 ORTHO05D005338 1.5e-10 69.7 150 32.7
Psat1g073520 Pisum sativum HOM05D000513 ORTHO05D005338 2.0e-10 69.3 148 32.4
Lalb_Chr02g0159331 Lupinus albus HOM05D000513 ORTHO05D005338 2.6e-10 68.9 150 32.7
QL02p082359 Quercus lobata HOM05D000513 ORTHO05D005338 3.4e-10 68.6 148 31.8
HPP92_006026 Vanilla planifolia HOM05D000513 ORTHO05D005338 3.4e-10 68.6 181 29.3
CDE04G1630 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 4.4e-10 68.2 148 32.4
VMungo0464G2006 Vigna mungo HOM05D000513 ORTHO05D005338 5.8e-10 67.8 149 30.9
Ah.12g059870 Amaranthus hybridus HOM05D000513 ORTHO05D005338 7.6e-10 67.4 147 32.0
SGA_v2.0_scaffold499G52491 Striga asiatica HOM05D000513 ORTHO05D005338 7.6e-10 67.4 150 30.7
Lsat_1_v5_gn_2_88360 Lactuca sativa HOM05D000513 ORTHO05D005338 1.3e-09 66.6 149 30.2
Zm00001eb279740 Zea mays HOM05D000513 ORTHO05D005338 3.8e-09 65.1 150 31.3
Zm00001eb222830 Zea mays HOM05D000513 ORTHO05D005338 6.4e-09 64.3 150 30.7
Oeu039526.1 Olea europaea HOM05D000513 ORTHO05D005338 1.1e-08 63.5 148 32.4
Os06g0229800 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 1.1e-08 63.5 150 31.3
Os02g0744700 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 3.2e-08 62.0 150 30.0
AagrBONN_evm.TU.Sc2ySwM_344.4941 Anthoceros agrestis HOM05D000513 ORTHO05D005338 5.4e-08 61.2 148 30.4
Os10g0437600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 5.4e-08 61.2 150 30.7
SEGI_10180 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 5.4e-08 61.2 39 71.8
Zm00001eb194550 Zea mays HOM05D000513 ORTHO05D005338 5.4e-08 61.2 149 29.5
Mapoly0148s0026 Marchantia polymorpha HOM05D000513 ORTHO05D005338 1.2e-07 60.1 147 29.3
Phvul.004G029100 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 2.7e-07 58.9 39 66.7
SEGI_17123 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 3.5e-07 58.5 64 46.9
Zm00001eb254490 Zea mays HOM05D000513 ORTHO05D005338 3.5e-07 58.5 149 28.9
CDE07G0637 Ceratophyllum demersum HOM05D000513 ORTHO05D017819 4.6e-07 58.2 39 66.7
SMO234G0040 Selaginella moellendorffii HOM05D000513 ORTHO05D005338 4.6e-07 58.2 63 49.2
CSS0036692 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 7.8e-07 57.4 39 66.7
Pp3c21_6820 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.3e-06 56.6 148 29.1
Pp3c21_6821 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.3e-06 56.6 148 29.1
Pp3c22_6120 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.7e-06 56.2 39 59.0
Nn1g09855 Nelumbo nucifera HOM05D000513 ORTHO05D017819 2.3e-06 55.8 39 61.5
Nn1g06156 Nelumbo nucifera HOM05D000513 ORTHO05D005338 6.6e-06 54.3 39 59.0
Pp3c19_7710 Physcomitrium patens HOM05D000513 ORTHO05D005338 8.6e-06 53.9 39 56.4
Pp3c19_7712 Physcomitrium patens HOM05D000513 ORTHO05D005338 8.6e-06 53.9 39 56.4


User provided reference genes

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