Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.7e-183 646.0 342 100.0
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.0e-181 639.0 344 99.1
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 9.8e-176 620.2 342 96.8
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.5e-163 578.9 336 92.3
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 2.0e-160 569.3 344 89.5
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 4.6e-149 531.6 366 79.2
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 8.6e-140 500.7 278 94.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.5e-131 472.6 335 75.2
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.3e-131 472.2 333 76.3
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 4.3e-131 471.9 339 74.3
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 4.0e-129 465.3 337 73.0
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.6e-128 462.6 334 73.7
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.4e-128 462.2 334 73.4
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 3.4e-128 462.2 311 78.1
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 7.6e-128 461.1 300 79.0
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 9.9e-128 460.7 334 72.8
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.2e-127 459.5 337 72.7
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 3.8e-127 458.8 337 72.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.1e-126 457.2 302 77.8
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.4e-126 456.8 333 73.6
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.4e-126 456.8 333 72.7
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.9e-126 456.4 335 72.5
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.9e-126 456.4 302 77.8
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 3.2e-126 455.7 331 72.8
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 7.1e-126 454.5 339 72.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 7.1e-126 454.5 335 73.4
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 9.3e-126 454.1 333 71.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.2e-125 453.8 332 72.9
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 2.1e-125 453.0 335 73.4
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 4.6e-125 451.8 334 71.6
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 1.3e-124 450.3 335 71.9
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 2.3e-124 449.5 332 71.1
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 2.3e-124 449.5 334 72.5
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.3e-124 449.5 337 70.6
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 3.9e-124 448.7 335 71.6
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 6.6e-124 448.0 333 71.8
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 8.7e-124 447.6 338 70.4
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.1e-123 447.2 333 72.7
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.9e-123 446.4 309 74.4
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.6e-122 443.4 310 77.1
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.1e-122 443.0 332 70.2
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.4e-121 440.3 336 71.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-121 439.9 300 74.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.8e-121 439.9 340 71.8
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 6.9e-121 438.0 301 76.1
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 9.0e-121 437.6 333 70.0
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 9.0e-121 437.6 300 74.7
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 2.6e-120 436.0 300 74.7
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.6e-120 436.0 303 73.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 2.6e-120 436.0 336 67.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.6e-120 436.0 300 74.0
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 3.4e-120 435.6 313 73.8
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 4.5e-120 435.3 334 68.9
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 4.5e-120 435.3 333 69.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 7.6e-120 434.5 302 74.8
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 7.6e-120 434.5 334 70.1
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 9.9e-120 434.1 300 74.0
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.7e-119 433.3 333 69.4
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.7e-119 433.3 304 72.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 8.4e-119 431.0 302 73.5
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.4e-119 431.0 315 74.3
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.4e-118 430.3 302 74.2
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.4e-118 430.3 302 74.2
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 5.4e-118 428.3 335 70.1
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 5.4e-118 428.3 332 69.6
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 9.3e-118 427.6 331 70.1
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 1.2e-117 427.2 336 69.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-117 426.8 302 73.5
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 4.6e-117 425.2 335 67.5
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-116 424.1 333 68.2
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.3e-116 423.7 333 68.2
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 5.1e-116 421.8 350 67.7
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 1.1e-115 420.6 332 70.8
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 1.9e-115 419.9 357 66.1
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.9e-115 419.9 337 67.1
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 7.4e-115 417.9 340 66.5
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.7e-114 415.6 333 67.9
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 8.1e-114 414.5 331 68.3
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-113 413.7 341 68.3
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.8e-113 413.3 277 77.3
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.4e-113 412.9 341 68.9
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 9.0e-113 411.0 367 63.5
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 5.8e-112 408.3 317 71.0
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.7e-111 406.8 332 68.4
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 4.9e-111 405.2 342 63.7
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 6.4e-111 404.8 336 65.5
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 8.4e-111 404.4 307 68.1
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 8.4e-111 404.4 337 65.0
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 5.5e-110 401.7 339 67.0
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-109 400.2 311 68.5
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 4.6e-109 398.7 278 73.4
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 5.1e-108 395.2 400 58.2
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.3e-107 392.5 339 64.0
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.3e-106 390.6 312 69.2
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 6.2e-106 388.3 338 62.7
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.6e-101 373.6 297 68.0
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 2.7e-101 372.9 268 73.5
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 6.0e-101 371.7 297 66.3
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.9e-101 371.3 335 63.3
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.8e-100 370.2 325 62.5
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 6.7e-100 368.2 247 78.9
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 8.2e-98 361.3 322 60.6
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 5.3e-97 358.6 353 56.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 7.2e-94 348.2 305 63.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.1e-93 346.7 274 67.5
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 8.2e-90 334.7 248 69.0
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 3.4e-88 329.3 331 53.8
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 7.2e-86 321.6 213 77.0
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.7e-85 319.7 214 77.6
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 3.6e-85 319.3 237 75.5
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.8e-81 307.0 196 78.1
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 5.5e-78 295.4 279 57.3
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 3.9e-76 289.3 225 68.9
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.1e-70 271.2 206 70.4
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.5e-67 260.8 169 79.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.0e-63 248.1 169 74.6
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.9e-62 243.8 323 43.0
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-58 230.3 169 71.6
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 8.9e-44 181.8 278 41.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.9e-42 176.0 148 64.9
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 2.1e-37 160.6 113 71.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.9e-31 139.8 103 71.8
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.3e-26 122.1 99 65.7
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 3.2e-25 120.2 93 63.4
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.5e-22 111.3 113 54.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 9.5e-22 108.6 246 36.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 3.6e-21 106.7 79 69.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 6.2e-21 105.9 99 58.6
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.8e-20 102.4 118 55.9
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.5e-19 101.3 98 58.2
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.4e-17 94.7 62 80.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.4e-17 94.0 62 77.4
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.4e-17 92.8 61 75.4
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.2e-17 92.0 62 77.4
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-13 80.9 56 76.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.8e-13 80.5 84 47.6
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.8e-13 80.5 55 78.2
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 4.7e-13 79.7 81 48.1
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 4.7e-13 79.7 109 44.0
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 8.4e-10 68.9 37 75.7
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 3.2e-09 67.0 42 78.6
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.7e-08 63.9 53 64.2
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 4.6e-08 63.2 35 88.6
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 4.6e-08 63.2 35 88.6
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 8.7e-07 58.9 124 37.1
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.9e-06 57.8 40 72.5


User provided reference genes

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