Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 9.6e-36 152.9 74 100.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.3e-11 72.8 40 85.0
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.1e-11 72.0 40 85.0
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 2.4e-10 68.6 40 82.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.4e-10 68.6 40 82.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.4e-10 68.6 40 82.5
Solyc11g028330.2 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.9e-10 67.0 35 91.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 9.0e-10 66.6 40 80.0
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.5e-09 65.9 40 77.5
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.5e-09 65.9 40 77.5
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 5.8e-09 63.9 40 72.5
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 2.2e-08 62.0 40 72.5
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 2.2e-08 62.0 40 70.0
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.9e-08 61.6 40 70.0
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.9e-08 61.6 40 70.0
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.8e-08 61.2 40 70.0
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 3.8e-08 61.2 40 70.0
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 4.9e-08 60.8 40 70.0
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 4.9e-08 60.8 40 67.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 65.0
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 67.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 67.5
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 67.5
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 70.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 6.5e-08 60.5 40 70.0
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 8.4e-08 60.1 40 67.5
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 62.5
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 65.0
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 65.0
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 65.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 62.5
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 62.5
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 67.5
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 1.1e-07 59.7 40 62.5
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.4e-07 59.3 40 67.5
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.4e-07 59.3 40 60.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.4e-07 59.3 40 65.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 60.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 60.0
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 65.0
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 65.0
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 65.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 65.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 57.5
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 57.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 57.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 57.5
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 57.5
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 67.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 1.9e-07 58.9 40 60.0
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 57.5
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 65.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 65.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 57.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 60.0
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 65.0
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.5e-07 58.5 40 62.5
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 62.5
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 62.5
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 65.0
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 65.0
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 65.0
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 65.0
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 65.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.2e-07 58.2 40 60.0
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 4.2e-07 57.8 39 66.7
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 62.5
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 65.0
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 65.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 62.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.5e-07 57.4 40 62.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 5.5e-07 57.4 40 62.5
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 62.5
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 62.5
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 5.5e-07 57.4 40 62.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 7.1e-07 57.0 39 59.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 60.0
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 7.1e-07 57.0 37 70.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 7.1e-07 57.0 46 58.7
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 62.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 7.1e-07 57.0 40 60.0
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 9.3e-07 56.6 40 62.5
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 9.3e-07 56.6 40 62.5
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 9.3e-07 56.6 40 62.5
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 9.3e-07 56.6 40 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.2e-06 56.2 40 60.0
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.2e-06 56.2 40 60.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.6e-06 55.8 40 62.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.6e-06 55.8 40 62.5
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.6e-06 55.8 40 60.0
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.6e-06 55.8 40 57.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.6e-06 55.8 40 62.5
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 2.1e-06 55.5 40 57.5
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.1e-06 55.5 40 57.5
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 3.5e-06 54.7 40 55.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 4.6e-06 54.3 40 60.0
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 4.6e-06 54.3 40 60.0
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 6.0e-06 53.9 39 59.0
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 7.9e-06 53.5 40 57.5


User provided reference genes

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