Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g028040.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 3.6e-52 208.0 106 100.0
Solyc11g028070.2 Solanum lycopersicum HOM05D009059 ORTHO05D011207 5.0e-46 187.6 106 91.5
Sopen11g012530 Solanum pennellii HOM05D009059 ORTHO05D011207 8.5e-46 186.8 106 91.5
Solyc07g006380.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.8e-35 152.5 106 75.5
Sopen07g002470 Solanum pennellii HOM05D009059 ORTHO05D011207 1.3e-33 146.4 106 72.6
Solyc07g150108.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 6.4e-33 144.1 84 84.5
Solyc07g016095.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.7e-31 138.7 84 79.8
CAN.G584.62 Capsicum annuum HOM05D009059 ORTHO05D011207 3.5e-31 138.3 103 68.9
CAN.G584.63 Capsicum annuum HOM05D009059 ORTHO05D011207 6.8e-27 124.0 96 64.6
Nitab4.5_0005347g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.7e-25 118.2 106 61.3
CAN.G1610.5 Capsicum annuum HOM05D009059 ORTHO05D011207 1.1e-24 116.7 103 59.2
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.4e-24 114.4 106 60.4
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 5.4e-24 114.4 106 60.4
Nitab4.5_0003765g0030 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.6e-23 112.8 104 58.7
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 3.5e-23 111.7 105 60.0
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 6.0e-23 110.9 103 57.3
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 7.8e-23 110.5 104 57.7
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 7.8e-23 110.5 106 57.5
Nitab4.5_0003165g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 8.6e-22 107.1 106 58.5
CAN.G584.67 Capsicum annuum HOM05D009059 ORTHO05D011207 5.6e-21 104.4 103 53.4
CAN.G1084.27 Capsicum annuum HOM05D009059 ORTHO05D011207 7.3e-21 104.0 103 52.4
CAN.G1610.6 Capsicum annuum HOM05D009059 ORTHO05D011207 3.1e-19 98.6 81 59.3
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 3.1e-19 98.6 106 52.8
CAN.G3387.1 Capsicum annuum HOM05D009059 ORTHO05D011207 6.8e-19 97.4 82 57.3
Solyc07g016120.3 Solanum lycopersicum HOM05D009059 ORTHO05D011207 1.5e-18 96.3 59 79.7
Solyc11g028060.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 2.0e-18 95.9 56 87.5
CAN.G1084.28 Capsicum annuum HOM05D009059 ORTHO05D011207 2.2e-17 92.4 85 52.9
Sopen07g005870 Solanum pennellii HOM05D000082 ORTHO05D000038 2.9e-17 92.0 55 85.5
Peaxi162Scf00297g00815 Petunia axillaris HOM05D009059 ORTHO05D011207 3.2e-16 88.6 105 46.7
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 4.1e-16 88.2 107 47.7
Peaxi162Scf00297g00816 Petunia axillaris HOM05D009059 ORTHO05D011207 6.0e-15 84.3 104 41.3
Solyc07g016113.1 Solanum lycopersicum HOM05D009059 ORTHO05D011207 6.0e-15 84.3 106 50.0
CAN.G5797.1 Capsicum annuum HOM05D009059 ORTHO05D011207 2.3e-14 82.4 60 61.7
Peaxi162Scf00005g00041 Petunia axillaris HOM05D009059 ORTHO05D011207 6.6e-14 80.9 105 42.9
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.5e-13 79.7 83 53.0
Peaxi162Scf00005g00035 Petunia axillaris HOM05D009059 ORTHO05D011207 6.2e-12 74.3 105 40.0
CAN.G1084.29 Capsicum annuum HOM05D009059 ORTHO05D011207 1.8e-11 72.8 62 54.8
Os02g0172000 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 5.8e-10 67.8 51 52.9
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 1.9e-08 62.8 59 45.8
Lalb_Chr16g0392501 Lupinus albus HOM05D001231 ORTHO05D001012 3.2e-08 62.0 48 56.2
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 3.2e-08 62.0 80 42.5
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.1e-08 61.6 71 40.8
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 5.4e-08 61.2 46 54.3
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 5.4e-08 61.2 47 53.2
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 5.4e-08 61.2 45 53.3
Glyma.16G100400 Glycine max HOM05D001231 ORTHO05D001012 7.1e-08 60.8 79 38.0
Phvul.003G282500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 7.1e-08 60.8 78 37.2
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 7.1e-08 60.8 79 44.3
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 7.1e-08 60.8 45 53.3
PGSC0003DMG400015133 Solanum tuberosum HOM05D001231 ORTHO05D001012 7.1e-08 60.8 45 53.3
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 9.2e-08 60.5 77 37.7
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 9.2e-08 60.5 45 51.1
MD13G1011600 Malus domestica HOM05D001231 ORTHO05D001012 2.1e-07 59.3 45 46.7
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 2.1e-07 59.3 45 53.3
Medtr3g032570 Medicago truncatula HOM05D001231 ORTHO05D001012 2.7e-07 58.9 80 37.5
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 2.7e-07 58.9 79 40.5
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.7e-07 58.9 66 42.4
Prupe.1G341600 Prunus persica HOM05D001231 ORTHO05D001012 2.7e-07 58.9 45 53.3
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 3.5e-07 58.5 45 48.9
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 3.5e-07 58.5 69 39.1
SGA_v2.0_scaffold23G10223 Striga asiatica HOM05D001231 ORTHO05D001012 3.5e-07 58.5 68 45.6
CAN.G458.12 Capsicum annuum HOM05D001231 ORTHO05D001012 4.6e-07 58.2 66 42.4
CAN.G976.4 Capsicum annuum HOM05D001231 ORTHO05D001012 4.6e-07 58.2 80 41.2
MD11G1113600 Malus domestica HOM05D001231 ORTHO05D001012 4.6e-07 58.2 46 50.0
Solyc07g007755.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 4.6e-07 58.2 79 41.8
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 6.0e-07 57.8 46 52.2
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 6.0e-07 57.8 45 51.1
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 7.8e-07 57.4 66 40.9
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 7.8e-07 57.4 78 39.7
FvH4_4g36102 Fragaria vesca HOM05D001231 ORTHO05D001012 7.8e-07 57.4 45 51.1
FAN07G0709 Fragaria x ananassa HOM05D001231 ORTHO05D001012 7.8e-07 57.4 45 51.1
C03p57970 Brassica napus HOM05D001231 ORTHO05D001012 1.0e-06 57.0 53 43.4
BolC5t30895H Brassica oleracea HOM05D001231 ORTHO05D001012 1.0e-06 57.0 53 43.4
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 1.0e-06 57.0 69 37.7
FAN22G0227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-06 57.0 45 51.1
AT2G31957 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 1.3e-06 56.6 51 43.1
FvH4_4g36104 Fragaria vesca HOM05D001231 ORTHO05D001012 1.3e-06 56.6 45 48.9
MD02G1207600 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-06 56.6 46 50.0
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-06 56.6 46 50.0
MD13G1012000 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-06 56.6 46 50.0
MD14G1073000 Malus domestica HOM05D001231 ORTHO05D001012 1.3e-06 56.6 46 50.0
PSO675G5343 Papaver somniferum HOM05D001231 ORTHO05D001012 1.3e-06 56.6 74 36.5
PGSC0003DMG400015129 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.3e-06 56.6 70 38.6
FAN12G0873 Fragaria x ananassa HOM05D001184 ORTHO05D003397 1.7e-06 56.2 72 38.9
MD11G1108800 Malus domestica HOM05D001231 ORTHO05D001012 1.7e-06 56.2 46 47.8
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 1.7e-06 56.2 46 50.0
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 1.7e-06 56.2 45 46.7
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 1.7e-06 56.2 79 39.2
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.7e-06 56.2 66 42.4
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 1.7e-06 56.2 68 41.2
Sopen07g003700 Solanum pennellii HOM05D001231 ORTHO05D001012 1.7e-06 56.2 66 40.9
C05p21990 Brassica napus HOM05D001231 ORTHO05D001012 2.3e-06 55.8 53 43.4
CAN.G976.2 Capsicum annuum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 79 39.2
CDE04G2371 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 46 45.7
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 2.3e-06 55.8 45 51.1
MD11G1108400 Malus domestica HOM05D001231 ORTHO05D001012 2.3e-06 55.8 46 47.8
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.3e-06 55.8 46 47.8
PSO541G0572 Papaver somniferum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 47 44.7
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 2.3e-06 55.8 67 40.3
RcHm_v2.0_Chr4g0445761 Rosa chinensis HOM05D001231 ORTHO05D001012 2.3e-06 55.8 45 48.9
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 2.3e-06 55.8 45 48.9
Sopen07g001020 Solanum pennellii HOM05D001231 ORTHO05D001012 2.3e-06 55.8 79 40.5
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 2.3e-06 55.8 45 48.9
Lj4g0025743 Lotus japonicus HOM05D001231 ORTHO05D001012 3.0e-06 55.5 78 35.9
MD16G1009000 Malus domestica HOM05D001231 ORTHO05D001012 3.0e-06 55.5 45 51.1
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.0e-06 55.5 47 40.4
Solyc07g007710.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 66 40.9
PGSC0003DMG400015130 Solanum tuberosum HOM05D001231 ORTHO05D001012 3.0e-06 55.5 78 39.7
Glyma.08G268000 Glycine max HOM05D001231 ORTHO05D001012 3.9e-06 55.1 76 36.8
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 74 40.5
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 3.9e-06 55.1 74 40.5
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 78 38.5
PGSC0003DMG400029484 Solanum tuberosum HOM05D001231 ORTHO05D001012 3.9e-06 55.1 66 40.9
CANSAT78G1068 Cannabis sativa HOM05D001231 ORTHO05D001012 5.1e-06 54.7 45 44.4
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 43.3
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 5.1e-06 54.7 45 51.1
Os02g0172300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 5.1e-06 54.7 68 39.7
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 40.3
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 5.1e-06 54.7 67 41.8
Carub.0005s0116 Capsella rubella HOM05D001231 ORTHO05D001012 6.6e-06 54.3 78 38.5
Carub.0008s2442 Capsella rubella HOM05D001231 ORTHO05D001012 6.6e-06 54.3 68 36.8
Gohir.A01G033800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 46 50.0
Gorai.002G029500 Gossypium raimondii HOM05D001231 ORTHO05D001012 6.6e-06 54.3 74 40.5
Medtr8g070770 Medicago truncatula HOM05D001231 ORTHO05D001012 6.6e-06 54.3 79 38.0
Medtr8g075980 Medicago truncatula HOM05D001231 ORTHO05D001012 6.6e-06 54.3 72 38.9
Nitab4.5_0000374g0050 Nicotiana tabacum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 78 38.5
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 80 37.5
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 80 37.5
PGSC0003DMG400030676 Solanum tuberosum HOM05D001231 ORTHO05D001012 6.6e-06 54.3 45 48.9
Gohir.D01G023523 Gossypium hirsutum HOM05D001231 ORTHO05D001012 8.6e-06 53.9 72 37.5
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 71 33.8
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 70 42.9
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 8.6e-06 53.9 68 39.7
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.9 45 44.4
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 8.6e-06 53.9 45 44.4
Hund02690 Selenicereus undatus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 66 37.9
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 8.6e-06 53.9 69 36.2
Zm00001eb304240 Zea mays HOM05D001231 ORTHO05D001012 8.6e-06 53.9 45 48.9


User provided reference genes

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