Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021217.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 4.5e-56 221.1 116 100.0
BolSC45t60908H Brassica oleracea HOM05D007371 ORTHO05D009319 2.4e-33 145.6 136 63.2
BolSC46t60957H Brassica oleracea HOM05D007371 ORTHO05D009319 3.1e-33 145.2 137 62.8
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 2.0e-32 142.5 90 87.8
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 2.0e-32 142.5 90 87.8
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 2.0e-32 142.5 90 87.8
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 4.5e-32 141.4 90 87.8
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-31 139.8 90 86.7
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 2.2e-31 139.0 90 86.7
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 5.0e-31 137.9 90 85.6
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 9.4e-30 133.7 90 83.3
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 9.4e-30 133.7 90 83.3
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 2.1e-29 132.5 90 83.3
CAN.G262.7 Capsicum annuum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 80.0
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 82.2
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 82.2
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 82.2
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 82.2
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.6e-29 131.7 90 82.2
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 4.7e-29 131.3 90 82.2
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 4.7e-29 131.3 90 82.2
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 1.0e-28 130.2 90 81.1
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 1.4e-28 129.8 85 85.9
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-28 129.4 90 80.0
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 1.8e-28 129.4 90 80.0
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.8e-28 129.4 90 81.1
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 2.3e-28 129.0 90 78.9
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 3.0e-28 128.6 90 77.8
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 5.2e-28 127.9 85 84.7
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 8.8e-28 127.1 85 83.5
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 2.6e-27 125.6 90 77.8
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC29t60547H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC35t60691H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC49t61144H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BolSC56t61236H Brassica oleracea HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BraSC143t45659Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 5.7e-27 124.4 85 80.0
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 5.7e-27 124.4 90 78.9
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 1.3e-26 123.2 85 80.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.7e-26 122.9 90 75.6
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 1.7e-26 122.9 90 75.6
BolC2t10612H Brassica oleracea HOM05D007371 ORTHO05D009319 2.8e-26 122.1 84 79.8
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.8e-26 122.1 85 80.0
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 4.8e-26 121.3 90 75.6
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 4.8e-26 121.3 90 75.6
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 6.3e-26 120.9 90 74.4
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 6.3e-26 120.9 85 80.0
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 1.8e-25 119.4 85 78.8
Potri.013G075100 Populus trichocarpa HOM05D007371 ORTHO05D009319 9.1e-25 117.1 85 76.5
HanXRQChr01g0000251 Helianthus annuus HOM05D007371 ORTHO05D009319 1.2e-24 116.7 111 67.6
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 2.0e-24 115.9 85 74.1
Hma1.2p1_0656F.1_g196806 Hydrangea macrophylla HOM05D007371 ORTHO05D009319 1.1e-22 110.2 78 82.1
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.1e-22 110.2 74 85.1
HanXRQChr00c0703g0576941 Helianthus annuus HOM05D007371 ORTHO05D009319 9.4e-22 107.1 75 82.7
BraSC138t45534Z Brassica rapa HOM05D007371 ORTHO05D009319 2.0e-19 99.4 86 68.6
arahy.Tifrunner.gnm1.ann1.5E4H9C Arachis hypogaea HOM05D007371 ORTHO05D009319 2.8e-18 95.5 78 70.5
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 2.8e-18 95.5 75 73.3
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.8e-17 92.8 71 74.6
Lalb_Chr09g0335451 Lupinus albus HOM05D007371 ORTHO05D009319 1.8e-17 92.8 65 75.4
HanXRQChr02g0037971 Helianthus annuus HOM05D007371 ORTHO05D009319 7.0e-17 90.9 83 67.5
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.9e-16 87.8 65 75.4
BolC7t43856H Brassica oleracea HOM05D007371 ORTHO05D009319 8.5e-15 84.0 56 75.0
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 4.2e-14 81.6 47 91.5
HanXRQChr11g0323761 Helianthus annuus HOM05D007371 ORTHO05D009319 9.4e-14 80.5 89 61.8
C02p24280 Brassica napus HOM05D007371 ORTHO05D009319 4.7e-13 78.2 70 65.7
Lsat_1_v5_gn_6_54121 Lactuca sativa HOM05D007371 ORTHO05D009319 1.7e-10 69.7 143 40.6
Gorai.013G109900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.2e-10 69.3 54 72.2
HanXRQChr02g0038001 Helianthus annuus HOM05D007371 ORTHO05D009319 1.1e-09 67.0 61 65.6
Aa31LG5G21710 Aethionema arabicum HOM05D007371 ORTHO05D009319 5.9e-08 61.2 59 66.1
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 5.9e-08 61.2 74 58.1


User provided reference genes

Program Settings