Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.7e-117 424.9 211 100.0
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 8.0e-104 380.6 266 75.9
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 7.3e-89 330.9 267 68.5
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 3.1e-47 192.6 276 43.8
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 3.4e-46 189.1 282 44.0
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.2e-45 186.4 280 43.6
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.9e-44 183.3 280 42.9
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 4.2e-44 182.2 281 43.1
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 1.6e-43 180.3 281 43.4
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.8e-31 140.2 279 38.4
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 2.4e-31 139.8 184 42.9
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 4.1e-31 139.0 285 36.1
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 5.9e-30 135.2 184 40.8
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.0e-29 134.4 183 40.4
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.0e-29 134.4 277 37.2
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 2.5e-28 129.8 181 40.9
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 4.2e-28 129.0 184 39.7
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 4.2e-28 129.0 183 39.9
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 7.2e-28 128.3 183 40.4
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 9.4e-28 127.9 243 35.8
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 1.6e-27 127.1 184 40.8
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 1.6e-27 127.1 183 39.9
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 2.7e-27 126.3 184 39.7
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 3.6e-27 125.9 251 34.3
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 4.7e-27 125.6 235 36.2
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 7.9e-27 124.8 182 40.1
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 1.0e-26 124.4 185 38.9
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.3e-26 123.2 185 38.4
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 2.3e-26 123.2 187 39.6
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 3.0e-26 122.9 218 41.3
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 3.0e-26 122.9 185 37.8
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 3.9e-26 122.5 228 34.2
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 5.1e-26 122.1 185 37.8
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 6.7e-26 121.7 183 37.2
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 8.8e-26 121.3 221 35.7
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 1.1e-25 120.9 187 39.6
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 1.5e-25 120.6 182 39.0
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.5e-25 120.6 185 37.8
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 3.3e-25 119.4 161 44.1
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 3.3e-25 119.4 185 36.8
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 3.3e-25 119.4 186 37.1
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 5.7e-25 118.6 191 37.2
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 9.7e-25 117.9 185 37.3
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 9.7e-25 117.9 186 37.1
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 1.3e-24 117.5 188 37.2
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.7e-24 117.1 185 37.3
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.7e-24 117.1 278 36.0
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.2e-24 116.7 193 37.8
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 2.2e-24 116.7 230 33.9
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 2.2e-24 116.7 220 34.1
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 3.7e-24 115.9 191 37.7
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 1.1e-23 114.4 184 37.0
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 1.8e-23 113.6 191 38.2
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 1.8e-23 113.6 215 35.8
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 1.8e-23 113.6 184 35.9
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 4.1e-23 112.5 182 35.7
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 5.3e-23 112.1 226 34.5
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 1.2e-22 110.9 246 30.9
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 1.5e-22 110.5 184 38.6
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 1.5e-22 110.5 184 34.8
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 1.5e-22 110.5 184 34.8
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 2.0e-22 110.2 235 33.2
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 4.5e-22 109.0 182 33.5
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 1.7e-21 107.1 184 33.7
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 2.2e-21 106.7 183 38.3
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 8.5e-21 104.8 183 35.0
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 1.6e-19 100.5 69 62.3
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 1.6e-19 100.5 70 64.3
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 2.1e-19 100.1 225 31.6
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 3.6e-19 99.4 70 64.3
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 3.6e-19 99.4 187 33.2
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 8.0e-19 98.2 224 31.2
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.0e-18 97.8 70 61.4
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 2.3e-18 96.7 70 62.9
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 3.0e-18 96.3 188 34.0
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 3.0e-18 96.3 201 32.3
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 4.0e-18 95.9 70 67.1
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 6.7e-18 95.1 185 33.0
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.1e-17 94.4 185 33.5
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.1e-17 94.4 70 60.0
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.6e-17 93.2 209 31.6
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 4.4e-17 92.4 69 60.9
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 4.4e-17 92.4 70 61.4
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 5.7e-17 92.0 69 60.9
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.3e-16 90.9 123 41.5
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 1.3e-16 90.9 123 41.5
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 2.2e-16 90.1 244 29.9
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 3.7e-16 89.4 70 57.1
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 3.7e-16 89.4 71 53.5
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 3.7e-16 89.4 124 38.7
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 3.1e-15 86.3 115 40.9
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 2.0e-14 83.6 71 52.1
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 2.0e-14 83.6 71 52.1
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 2.0e-14 83.6 71 52.1
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 2.0e-14 83.6 197 31.0
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 2.6e-14 83.2 71 52.1
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 3.5e-14 82.8 71 52.1
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 3.5e-14 82.8 71 52.1
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 4.5e-14 82.4 190 29.5
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 5.9e-14 82.0 70 51.4
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 1.7e-13 80.5 184 30.4
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 3.8e-13 79.3 70 52.9
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 8.5e-13 78.2 70 52.9
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 9.4e-12 74.7 53 62.3
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.1e-11 73.6 66 51.5
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 2.3e-10 70.1 171 30.4
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 3.7e-08 62.8 58 55.2
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 4.8e-08 62.4 98 37.8
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.4e-07 60.1 49 55.1
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.1e-07 59.7 71 46.5


User provided reference genes

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